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Job DescriptionP21889
Confidence100.00%DateThu Jan 5 11:38:40 GMT 2012
Rank11Aligned Residues422
% Identity24%Templatec3m4qA_
PDB info PDB header:ligaseChain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs)
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.. .......40.........50.........60.........70.........80.
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Query Sequence  TEYCGQLRLSHVGQQVTLCGWVNRRRDLGS. LIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEK
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Template Sequence  VCNIRDA. AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGK
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TT.T

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   14.....20 .........30.........40.........50.........60.........70.........80.........90..
 
   82....... 90.........100..... ....110.........120.........130.........140.........150.........
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Query Sequence  NINRDMAT. GEIEVLASSLTIINRA. DVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLD
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Template Sequence  NHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTE
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   93......100.........110.........120.........130.........140.........150.........160.........170..
 
   160.........170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFM
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Template Sequence  IQPPTIVKTTLFKLQYFNEPAY. . . . . . . . LTQSSQLYLESV. IASLGKSFCMLSSYRAE. . . . . HLAEYLHLEAELPFI
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   173......180.........190.... .....200...... ...210.........220... ......230........
 
   240.........250.........260.........270.........280.........290.........300.........310.........
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Query Sequence  TAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVA
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Template Sequence  SFEDLLNHLEDLVCTVIDNVMAV. . . . . . . . . HGDKIRKMNPHLKLPTRPFKRMT. . . . . . . . . . . . . . . . . . . . . . . . .
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   251........260.........270... ......280.........290......
 
   320.........330.........340.........350.........360.........370.........380.........390.........
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Query Sequence  ALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNK
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Template Sequence  . . . . . . . . . . . . . . YADAIKYCNDHGILNK. . . . . . . . . . . . . DKPFEYGEDISEKPERQMTDEI. . . . . . . . . . . . . . .
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SS.............SS


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   297..300.........310.. .......320.........330....
 
   400.........410.........420.........430.........440.........450.........460.........470.........
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Query Sequence  KIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVIN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . GCPIFMIHFP. . . . . . . . . . . SKMKAFYM. . . . . . . . SKVPGHPDLTESVDLLMP
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B...........GGGS
SSB........
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   335....340.... .....350.. .......360.........370
 
   480. ........490.........500.........510.........520.........530.........540.........550........
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Query Sequence  GY. EVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTT
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Template Sequence  GVGEIVGGSMRIWNYDELMGAYKANGLNPDP. . . . YYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYL
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TT


GG....GTT


T
SSGGGGSSS

BT
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   371........380.........390.........400. ........410.........420.........430.........440......
 
   559560...
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Query Sequence  AAACL
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Template Sequence  ERCEP
Template Known Secondary structure  TB


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   447..450.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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