 |
Job Description | P21889 | Confidence | 70.57% | Date | Thu Jan 5 11:38:40 GMT 2012 |
Rank | 133 | Aligned Residues | 82 |
% Identity | 16% | Template | c3eivB_ |
PDB info |
PDB header:dna binding protein | Chain: B: PDB Molecule:single-stranded dna-binding protein 2; |
PDBTitle: crystal structure of single-stranded dna-binding protein2 from streptomyces coelicolor
|
Resolution | 2.14 Å |
|
 |
  |   |
17 | . | . | 20 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 30 | . | . | |
. | . | . | . | . | . | . | |
|
|
|
|
|
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |
|
|
|
|
| . |  |  |  |  |  |  |  | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | V | T | L | C | G | W | V | N | R | . |
. |
. |
. |
. |
R | R | D | L | G | S | . |
L | I | F | I | D | M | R | . |
. |
. |
. |
. |
. |
D | R | E | G | I | V | Q | V | F | F | D | P | D | R | A | D | A | L | K | L | A | S | E | L | R | N | E | F | C | I | Q | V | T | G | T | V | R | A | R | D | E | K | N | I | N |
Query Conservation |   |
  |
|   |
|   |
|   |
|   |   | . | . | . | . | . |   |
|   |   |
|   | . |
|   |
|
|   |
|
| . | . | . | . | . | . |
|   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |
|   |
|   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |   | . | . |   |
|   |   |   |   |   |   |
|   |
|
|   |   |
|   |
|   |
|   |
|   |   |   |   |   |   |
|   |   |
Template Sequence |   |
V | I | T | V | V | G | N | L | V | D | D | P | E | L | R | F | T | P | S | G | A | A | V | A | K | F | R | V | A | S | T | P | R | T | D | G | E | S | L | F | L | T | C | S | V | W | R | Q | . |
. |
A | A | E | N | V | A | E | S | L | Q | R | G | M | R | V | I | V | Q | G | R | L | K | Q | R | S | Y | E | D | R | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | S | S |
|
|  |  |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |
|
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|  | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
  |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | D | M | A | T | G | E | I | E | V | L | A | S | S | L | T | I |
Query Conservation |   |
  |   |   |   |   |
|   |
|
|
|   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   | . |   |   |
|   |
|   |   |
|   |   |
Template Sequence |   |
G | V | K | R | T | V | . |
Y | E | L | D | V | D | E | V | G | A |
Template Known Secondary structure |   |
S |
|  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  | . |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | |
. | 100 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|