Job Description P21889 Confidence 100.00% Date Thu Jan 5 11:38:40 GMT 2012 Rank 5 Aligned Residues 436 % Identity 27% Template c3e9hB_ PDB info PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.											.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																																										.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.																																										.	.
Query Sequence		R	T	E	Y	C	G	Q	L	R	L	.	.	.	.	.	.	.	.	.	.	S	H	V	G	Q	Q	V	T	L	C	G	W	V	N	R	R	R	D	L	G	S	L	I	F	I	D	M	R	D	R	E	G	I	V	Q	V	F	F	D	P	D	.	.	R	A	D	A	L	K	L	A	S	E	L	R	N	E	F	C	I
Query Conservation												.	.	.	.	.	.	.	.	.	.																																										.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.																																										.	.
Template Conservation
Template Sequence		R	T	H	K	A	E	E	L	F	E	L	Y	G	D	L	S	K	E	E	L	E	E	Q	Q	I	E	V	A	V	A	G	R	I	M	T	K	R	G	M	G	K	A	G	F	A	H	I	Q	D	V	T	G	Q	I	Q	I	Y	V	R	Q	D	D	V	G	E	Q	Q	Y	E	L	F	K	I	S	D	L	G	D	I	V
Template Known Secondary structure			S											T	T	S																									T	T									T	T																									T	T
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																									.
Query SS confidence																																						.																									.
Query Sequence		Q	V	T	G	T	V	R	A	R	D	E	K	N	I	N	R	D	M	A	T	G	E	I	E	V	L	A	S	S	L	T	I	I	N	R	A	.	D	V	L	P	L	D	S	N	H	V	N	T	E	E	A	R	L	K	Y	R	Y	L	D	L	.	R	R	P	E	M	A	Q	R	L	K	T	R	A	K	I	T	S	L
Query Conservation																																						.																									.
Alig confidence									.	.	.	.	.	.	.	.	.																					.							.	.	.	.	.														.
Template Conservation									.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Sequence		G	V	R	G	T	M	F	.	.	.	.	.	.	.	.	.	K	T	K	V	G	E	L	S	I	K	V	S	S	Y	E	F	L	T	K	A	L	R	P	L	P	E	K	.	.	.	.	.	D	I	E	Q	R	Y	R	Q	R	Y	L	D	L	I	M	N	P	E	S	K	K	T	F	I	T	R	S	L	I	I	Q	S
Template Known Secondary structure									.	.	.	.	.	.	.	.	.			T	T																	S	S						.	.	.	.	.		T	T					T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.										120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		V	R	R	F	M	D	D	H	G	F	L	D	I	E	T	P	M	L	T	K	A	T	P	E	G	.	A	R	D	Y	L	V	P	S	R	V	H	K	G	K	F	Y	A	L	P	Q	S	P	Q	L	F	K	Q	L	L	M	M	S	G	F	D	R	Y	Y	Q	I	V	K	C	F	R	D	E	D	L	R	A	D	R	Q
Query Conservation																											.
Alig confidence																											.																	.
Template Conservation																																												.
Template Sequence		M	R	R	Y	L	D	S	H	G	Y	L	E	V	E	T	P	M	M	H	A	V	A	G	G	A	A	A	R	P	F	I	T	H	H	N	A	L	D	M	T	L	Y	.	M	R	I	A	I	E	L	H	L	K	R	L	I	V	G	G	L	E	K	V	Y	E	I	G	R	V	F	R	N	E	G	I	S	T	R	H	N
Template Known Secondary structure									T	T								S			S	S			S	S	S									T	T	T	T					.			S		S										T	T																	B	T	T	B
Template Predicted Secondary structure																																												.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	F	T	Q	I	D	V	E	T	S	F	M	T	A	P	Q	V	R	E	V	M	E	A	L	V	R	H	L	W	L	E	V	K	G	V	D	L	G	D	F	P	V	M	T	F	A	E	A	E	R	R	Y	G	S	D	K	P	D	L	R	N	P	M	E	L	T	D	V	A	D	L	L	K	S	V	E	F	A	V
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		P	E	F	T	M	L	E	L	Y	E	A	Y	A	D	F	R	D	I	M	K	L	T	E	N	L	I	A	H	I	A	T	E	V	L	G	T	T	K	I	.	.	.	.	.	.	.	.	.	.	.	.	Q	Y	G	E	H	L	V	D	L	T	P	E	W	R	R	L	H	M	V	D	A	I	K	E	.	.	.	.	.
Template Known Secondary structure		S											T																							S		S			.	.	.	.	.	.	.	.	.	.	.	.			T	T							S	S													.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.													.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	G	P	A	N	D	P	K	G	R	V	A	A	L	R	V	P	G	G	A	S	L	T	R	K	Q	I	D	E	Y	G	N	F	V	K	I	Y	G	A	K	G	L	A	Y	I	K	V	N	E	R	A	K	G	L	E	G	I	N	S	P	V	A	K	F	L	N	A	E	I	I	E	D	I	L	D	R	T	A	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	G	V	D	F	W	R	Q	M	S	D	E	E	A	R	E	L	A	K	E	H	G	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S															T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																										326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	G	D	M	I	F	F	G	A	D	N	K	K	I	V	A	D	A	M	G	A	L	R	L	K	V	G	K	D	L	G	L	T	D	E	S	K	W	A	P	L	W	V	I	D	F	P	M	F	E	D	D	G	E	G	G	L	T	A	M	H	H	P	F	T	S	P	K	D	M	T	A	A	E	L	K	A	A	P
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	A	P	H	M	T	F	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	N	E	F	F	E	Q	K	V	E	D	K	L	I	Q	P	T	F	I	Y	G	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	I	S	P	L	A	K	K	N	P	D
Template Known Secondary structure					T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	G	G	G			S								B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G		T	T	B		B		S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.															360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.																					.	.	.	.	.	.	390	.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.					.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		E	N	A	V	A	N	A	Y	D	M	V	I	N	G	Y	E	V	G	G	G	S	V	R	I	H	N	G	D	M	Q	Q	T	V	F	G	I	.	.	.	.	L	G	I	N	E	E	E	Q	R	E	K	F	G	F	L	L	D	A	L	K	Y	G	T	P	P	H	A	G	L	A	F	G	L	D	R	L	T	M	L	L
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.
Template Conservation
Template Sequence		D	P	R	F	T	D	R	F	E	L	F	I	V	G	R	E	H	A	N	A	F	T	E	L	N	D	P	I	D	Q	R	Q	R	F	E	E	Q	L	K	E	R	E	Q	G	N	D	E	A	H	E	M	D	E	D	F	L	E	A	L	E	Y	G	M	P	P	T	G	G	L	G	I	G	V	D	R	L	V	M	L	L
Template Known Secondary structure			T	T	B	B	S							T	T									B																				T	T		T	T														T				S															T
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	T	D	N	I	R	D	V	I	A	F	P	K	T	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	S	P	S	I	R	D	V	L	L	F	P	Q	M	R	H
Template Known Secondary structure		T	T		S	S	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.