Job Description P21889 Confidence 98.21% Date Thu Jan 5 11:38:40 GMT 2012 Rank 85 Aligned Residues 132 % Identity 11% Template c2cj9A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of methanosarcina barkeri seryl-trna2 synthetase complexed with an analog of seryladenylate Resolution 2.3 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																				.															.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.															.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	T	R	A	K	I	T	S	L	V	R	R	F	M	D	D	H	.	G	F	L	D	I	E	T	P	M	L	T	K	A	T	.	.	.	.	.	.	.	.	P	E	G	A	R	D	Y	L	V	P	S	R	V	H	K	G	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.															.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.															.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	I	F	R	T	F	E	K	I	V	L	E	E	L	L	E	P	L	G	Y	R	E	M	I	F	P	K	L	V	T	W	E	V	W	M	K	S	G	H	A	K	G	V	Y	P	E	I	Y	Y	V	C	P	P	Q	T	R	D	P	D	Y	W	E	E	V	A	D	Y	Y	K	V	T	H	E	V	P	T	K	L	I
Template Known Secondary structure																T	T	T	T	T	T								S											S	G	G	G	T		G	G	G							B	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
										188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.								.											.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.								.											.	.	.
Query Sequence		.	.	.	.	.	.	.	.	Y	A	L	P	Q	S	P	Q	L	F	K	Q	L	L	M	M	S	G	F	D	.	.	.	.	.	.	.	R	Y	Y	Q	I	V	K	.	C	F	R	D	E	D	L	R	A	D	.	.	.	R	Q	P	E	F	T	Q	I	D	V	E	T	S	F	M	T	A	P	Q	V	R	E	V	M
Query Conservation		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.								.											.	.	.
Alig confidence		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.								.											.	.	.												.
Template Conservation																																																																					.
Template Sequence		K	E	K	I	A	E	P	I	G	G	M	C	Y	A	Q	C	P	P	F	W	M	Y	V	A	G	E	T	L	P	N	E	E	I	P	V	K	V	F	D	R	S	G	T	S	H	R	Y	E	S	G	G	I	H	G	I	E	R	V	D	E	F	H	R	I	E	I	V	.	W	I	G	T	K	E	E	V	L	K	C	A
Template Known Secondary structure					B		S							S	S	S	S	G	G	G	G	G	G	T	T	T					G	G	G		S							S	S								S	S				T	T	S		S									.
Template Predicted Secondary structure																																																																					.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	V	R	H	L	W	L	E	V	K	G	V	D	L	G	D	F	P	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	L	H	D	R	Y	M	H	I	F	N	D	I	L	D	I	E	W	R	K	A
Template Known Secondary structure															T	S
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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