Job Description P21889 Confidence 100.00% Date Thu Jan 5 11:38:40 GMT 2012 Rank 7 Aligned Residues 429 % Identity 31% Template c1b8aB_ PDB info PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		R	T	E	Y	C	G	Q	L	R	L	S	H	V	G	Q	Q	V	T	L	C	G	W	V	N	R	R	R	D	L	G	S	L	I	F	I	D	M	R	D	R	E	G	I	V	Q	V	F	F	D	P	D	R	.	.	A	D	A	L	K	L	A	S	E	L	R	N	E	F	C	I	Q	V	T	G	T	V	R	A	R	D
Query Conservation																																																						.	.
Alig confidence																																																						.	.
Template Conservation
Template Sequence		R	T	H	Y	S	S	E	I	T	E	E	L	N	G	Q	K	V	K	V	A	G	W	V	W	E	V	K	D	L	G	G	I	K	F	L	W	I	R	D	R	D	G	I	V	Q	I	T	A	P	K	K	K	V	D	P	E	L	F	K	L	I	P	K	L	R	S	E	D	V	V	A	V	E	G	V	V	N	F	T	P
Template Known Secondary structure			S			G	G	G			G	G	G	T	T																S	S									T	T									G	G	G	S								G	G	G			T	T													T
Template Predicted Secondary structure
Template SS confidence
		1003	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																												.										.	.
Query SS confidence																												.										.	.
Query Sequence		E	K	N	I	N	R	D	M	A	T	G	E	I	E	V	L	A	S	S	L	T	I	I	N	R	A	.	D	V	L	P	L	D	S	N	H	.	.	V	N	T	E	E	A	R	L	K	Y	R	Y	L	D	L	R	R	P	E	M	A	Q	R	L	K	T	R	A	K	I	T	S	L	V	R	R	F	M	D	D	H	G
Query Conservation																												.										.	.
Alig confidence							.	.	.	.	.	.	.															.										.	.
Template Conservation							.	.	.	.	.	.	.
Template Sequence		K	A	K	L	G	.	.	.	.	.	.	.	F	E	I	L	P	E	K	I	V	V	L	N	R	A	E	T	P	L	P	L	D	P	T	G	K	V	K	A	E	L	D	T	R	L	N	N	R	F	M	D	L	R	R	P	E	V	M	A	I	F	K	I	R	S	S	V	F	K	A	V	R	D	F	F	H	E	N	G
Template Known Secondary structure		T	S	T	T	S	.	.	.	.	.	.	.																S	S		S	S		T	T	S	S	S										T					T	T	S																								T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.
Template SS confidence
		1083	.	.	.	.								.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		F	L	D	I	E	T	P	M	L	T	K	A	T	P	E	G	A	R	D	Y	L	V	P	S	R	V	H	K	G	K	F	Y	A	L	P	Q	S	P	Q	L	F	K	Q	L	L	M	M	S	G	F	D	R	Y	Y	Q	I	V	K	C	F	R	D	E	D	L	R	A	D	R	Q	P	.	E	F	T	Q	I	D	V	E
Query Conservation																																																																									.
Alig confidence																																	.	.																																							.
Template Conservation																																	.	.
Template Sequence		F	I	E	I	H	T	P	K	I	I	A	T	A	T	E	G	G	T	E	L	F	P	M	K	Y	F	E	E	D	A	F	.	.	L	A	E	S	P	Q	L	Y	K	E	I	M	M	A	S	G	L	D	R	V	Y	E	I	A	P	I	F	R	A	E	E	H	N	T	T	R	H	L	N	E	A	W	S	I	D	S	E
Template Known Secondary structure									S							S	S			S							T	T					.	.			S		S							G	G	G	T	T															S	S			T	T			S
Template Predicted Secondary structure																																	.	.
Template SS confidence
		1156	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.			.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.
		236	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		T	S	F	.	M	T	A	P	Q	V	R	E	V	M	E	A	L	V	R	H	L	W	L	E	V	K	G	V	D	L	G	D	F	P	V	M	T	F	A	E	A	E	R	R	Y	G	S	D	K	P	D	L	R	N	P	M	E	L	T	D	V	A	D	L	L	K	S	V	E	F	A	V	F	A	G	P	A	N	D	P
Query Conservation					.
Alig confidence					.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	F	I	E	D	E	E	E	V	M	S	F	L	E	R	L	V	A	H	A	I	N	Y	V	R	E	H	N	A	K	E	L	D	I	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S		S	S																														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1234	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	R	V	A	A	L	R	V	P	G	G	A	S	L	T	R	K	Q	I	D	E	Y	G	N	F	V	K	I	Y	G	A	K	G	L	A	Y	I	K	V	N	E	R	A	K	G	L	E	G	I	N	S	P	V	A	K	F	L	N	A	E	I	I	E	D	I	L	D	R	T	A	A	Q	D	G	D	M	I	F	F
Query Conservation
Alig confidence		.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	F	E	L	E	E	P	K	L	P	F	P	R	V	S	Y	D	K	A	L	E	I	L	G	D	L	G	K	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	W	G	E	D	I	D	T	E	G	E	R	L	L	G	K	Y	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.								S	S																T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S														.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							1271	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.																			1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	D	N	K	K	I	V	A	D	A	M	G	A	L	R	L	K	V	G	K	D	L	G	L	T	D	E	S	K	W	A	P	L	W	V	I	D	F	P	M	F	E	D	D	G	E	G	G	L	T	A	M	H	H	P	F	T	S	P	K	D	M	T	A	A	E	L	K	A	A	P	E	N	A	V	A	N	A	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	M	E	N	E	N	A	P	L	Y	F	L	Y	Q	Y	P	.	.	.	.	.	.	.	.	.	.	.	S	E	A	K	P	F	Y	I	.	.	.	.	.	.	.	.	M	K	Y	D	N	K	P	E	I	C	R	A	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S						S		B	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S		T	T	B	.	.	.	.	.	.	.	.				T	T						S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template SS confidence
																										1317	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.												.	.	.	.	.	.	.	1340									.	.	.	.	.	.	.	.	.	1350	.	.	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	V	I	N	G	Y	E	V	G	G	G	S	V	R	I	H	N	G	D	M	Q	Q	T	V	F	G	I	L	G	I	N	E	E	E	Q	R	E	K	F	G	F	L	L	D	A	L	K	Y	G	T	P	P	H	A	G	L	A	F	G	L	D	R	L	T	M	L	L	T	G	T	D	N	I	R	D	V	I	A	F
Query Conservation
Alig confidence																																					.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		D	L	E	Y	R	G	V	E	I	S	S	G	G	Q	R	E	H	R	H	D	I	L	V	E	Q	I	K	E	K	G	L	N	P	E	S	.	.	.	.	F	E	F	Y	L	K	A	F	R	Y	G	M	P	P	H	G	G	F	G	L	G	A	E	R	L	I	K	Q	M	L	D	L	P	N	I	R	E	V	I	L	F
Template Known Secondary structure						T	T									B														T	T			G	G	G	.	.	.	.	G					G	G	G	S	S																				T	T		S		G	G	G	S	S	S	S
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		1354	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.					.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.
		555	.	.	.	.	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	T	T	A	A	A	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	R	D	R	R	R	L	T	P
Template Known Secondary structure					S	S
Template Predicted Secondary structure
Template SS confidence
		1430	.	.	.	.	.	.	.	.