Job Description P21889 Confidence 100.00% Date Thu Jan 5 11:38:40 GMT 2012 Rank 8 Aligned Residues 442 % Identity 26% Template c1asyA_ PDB info PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																	.																						.	.	.	.	.
Query SS confidence																																	.																						.	.	.	.	.
Query Sequence		R	T	E	Y	C	G	Q	L	R	L	S	H	V	G	Q	Q	V	T	L	C	G	W	V	N	R	R	R	D	L	G	S	.	L	I	F	I	D	M	R	D	R	E	G	I	V	Q	V	F	F	D	P	D	R	.	.	.	.	.	A	D	A	L	K	L	A	S	E	L	R	N	E	F	C	I	Q	V	T	G	T	V
Query Conservation																																	.																						.	.	.	.	.
Alig confidence																																	.																						.	.	.	.	.
Template Conservation
Template Sequence		R	V	K	F	V	D	L	D	E	A	K	D	S	D	K	E	V	L	F	R	A	R	V	H	N	T	R	Q	Q	G	A	T	L	A	F	L	T	L	R	Q	Q	A	S	L	I	Q	G	L	V	K	A	N	K	E	G	T	I	S	K	N	M	V	K	W	A	G	S	L	N	L	E	S	I	V	L	V	R	G	I	V
Template Known Secondary structure					G	G	G			S	S	S	S	S	S																	T	T								S	S	S											T	T	S	S	S										T			T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.															.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	R	D	E	K	N	I	N	R	D	M	A	T	G	E	I	E	V	L	A	S	S	L	T	I	I	N	R	A	.	D	V	L	P	L	D	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	N	T	E	E	A	R	L	K	Y	R	Y	L	D	L	R	R	P	E	M	A	Q	R	L	K	T
Query Conservation																																.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																			.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		K	K	V	D	E	P	I	K	S	A	.	.	T	V	Q	N	L	E	I	H	I	T	K	I	Y	T	I	S	E	T	P	E	A	L	P	I	L	L	E	D	A	S	R	S	E	A	E	A	E	A	A	G	L	P	V	V	N	L	D	T	R	L	D	Y	R	V	I	D	L	R	T	V	T	N	Q	A	I	F	R	I
Template Known Secondary structure					S	S			S	S		.	.	S	S	T	T																S			S	S							S							T	T	S												T					T	T	S	T	T
Template Predicted Secondary structure												.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	K	I	T	S	L	V	R	R	F	M	D	D	H	G	F	L	D	I	E	T	P	M	L	T	K	A	T	P	E	G	A	R	D	Y	L	V	P	S	R	V	H	K	G	K	F	Y	A	L	P	Q	S	P	Q	L	F	K	Q	L	L	M	M	S	G	F	D	R	Y	Y	Q	I	V	K	C	F	R	D	E	D
Query Conservation
Alig confidence																																																.	.
Template Conservation																																																.	.
Template Sequence		Q	A	G	V	C	E	L	F	R	E	Y	L	A	T	K	K	F	T	E	V	H	T	P	K	L	L	G	A	P	S	E	G	G	S	S	V	F	E	V	T	Y	F	K	G	K	A	.	.	Y	L	A	Q	S	P	Q	F	N	K	Q	Q	L	I	V	A	D	F	E	R	V	Y	E	I	G	P	V	F	R	A	E	N
Template Known Secondary structure																T	T								S			S	S		S	T	T	T	T	S			B			B	T	T	B			.	.				S		S										T	T														S
Template Predicted Secondary structure																																																.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure									.														.
Query SS confidence									.														.
Query Sequence		L	R	A	D	R	Q	P	.	E	F	T	Q	I	D	V	E	T	S	F	M	T	.	A	P	Q	V	R	E	V	M	E	A	L	V	R	H	L	W	L	E	V	K	G	V	D	L	G	D	F	P	V	M	T	F	A	E	A	E	R	R	Y	G	S	D	K	P	D	L	R	N	P	M	E	L	T	D	V	A	D	L
Query Conservation									.														.
Alig confidence									.														.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	N	T	H	R	H	M	T	E	F	T	G	L	D	M	E	M	A	F	E	E	H	Y	H	E	V	L	D	T	L	S	E	L	F	V	F	I	F	S	E	L	P	K	R	F	A	H	E	I	E	L	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	S			S	S											S	S		T																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	S	V	E	F	A	V	F	A	G	P	A	N	D	P	K	G	R	V	A	A	L	R	V	P	G	G	A	S	L	T	R	K	Q	I	D	E	Y	G	N	F	V	K	I	Y	G	A	K	G	L	A	Y	I	K	V	N	E	R	A	K	G	L	E	G	I	N	S	P	V	A	K	F	L	N	A	E	I	I	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	Y	P	V	E	E	F	K	L	P	K	D	G	K	M	V	R	L	T	Y	K	E	G	I	E	M	L	R	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	I	G	D	F	E	D	L	S	T	E	N	E	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S									S	S	S																	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.																			.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	L	D	R	T	A	A	Q	D	G	D	M	I	F	F	G	A	D	N	K	K	I	V	A	D	A	M	G	A	L	R	L	K	V	G	K	D	L	G	L	T	D	E	S	K	W	A	P	L	W	V	I	D	F	P	M	F	E	D	D	G	E	G	G	L	T	A	M	H	H	P	F	T	S	P	K	D	M	T
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Sequence		F	L	G	K	L	V	R	D	K	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	F	Y	I	L	D	K	F	P	.	.	.	.	.	.	.	.	.	.	.	L	E	I	R	P	F	Y	T	.	.	.	.	.
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S								B	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S		T	T	B	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.																																				440	.	.	.	.	.	.	.	.	.												450	.	.	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	E	L	K	A	A	P	E	N	A	V	A	N	A	Y	D	M	V	I	N	G	Y	E	V	G	G	G	S	V	R	I	H	N	G	D	M	Q	Q	T	V	F	G	I	L	G	I	N	E	E	E	Q	R	E	K	F	G	F	L	L	D	A	L	K	Y	G	T	P	P	H	A	G	L	A	F	G	L	D	R	L
Query Conservation
Alig confidence		.	.	.																																																	.	.
Template Conservation		.	.	.																																																	.	.
Template Sequence		.	.	.	M	P	D	P	A	N	P	K	Y	S	N	S	Y	D	F	F	M	R	G	E	E	I	L	S	G	A	Q	R	I	H	D	H	A	L	L	Q	E	R	M	K	A	H	G	L	S	P	E	D	.	.	P	G	L	K	D	Y	C	D	G	F	S	Y	G	C	P	P	H	A	G	G	G	I	G	L	E	R	V
Template Known Secondary structure		.	.	.		B		S	S		T	T	B	B	S							T	T																							T	T			T	T	S	.	.									T	T	T	T
Template Predicted Secondary structure		.	.	.																																																	.	.
Template SS confidence
					458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.			.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	L	L	T	G	T	D	N	I	R	D	V	I	A	F	P	K	T	T	A	A	A	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	M	F	Y	L	D	L	K	N	I	R	R	A	S	L	F	P	R	D	P	K	R	L	R	P
Template Known Secondary structure							T		S		G	G	G	G	S	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.