Job Description P0AFJ1 Confidence 84.10% Date Thu Jan 5 11:26:29 GMT 2012 Rank 14 Aligned Residues 36 % Identity 19% Template c1i3qI_ PDB info PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution Resolution 3.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.												.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	C	P	K	C	N	S	E	Y	T	Y	.	.	.	.	.	.	.	.	.	.	.	E	D	N	G	M	Y	I	C	P	E	C	A	Y	E	W	N	D	A	E	P	A	Q	E	S	D
Query Conservation													.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	C	P	K	C	H	S	R	E	N	V	F	F	Q	S	Q	Q	R	R	K	D	T	S	M	V	L	F	F	V	C	L	S	C	S	H	I	F	T	S	D	Q	K	N	K	R	T	Q
Template Known Secondary structure				T	T	T			S		B						S				S	S									B	T	T	T								T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions