Job Description P77263 Confidence 95.61% Date Thu Jan 5 12:26:58 GMT 2012 Rank 20 Aligned Residues 84 % Identity 8% Template c1z9oB_ PDB info PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif Resolution 1.90 Å

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		28	.	30	.	.		.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure							.								.	.	.
Query SS confidence							.								.	.	.
Query Sequence		I	S	V	G	N	.	L	T	F	S	L	P	S	.	.	.	E	T	D	F	V	S	K	R	V	V	N	N	N	K	S	A	R	I	Y	R	I	A	I	S	A	I	D	S	P	G	S	S	E	L	R	T	R	P	V	D	G	E	L	L	F	A	P	R	Q	L	A	L	Q	A	G	E	S	E	Y	F	K	F	Y	Y
Query Conservation							.								.	.	.
Alig confidence							.								.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	L	D	P	P	S	D	L	K	F	K	G	P	F	T	D	V	V	T	T	N	L	K	L	Q	N	P	S	D	R	K	V	C	F	K	V	K	T	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	R	Y	C	V	R	P	N	S	G	V	I	D	P	G	S	I	V	T	V	S	V	M	L
Template Known Secondary structure		S				S	S	S						S			S	S												S	S	S									S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G					S	S						T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.															.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		104	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		H	G	.	.	.	.	P	R	D	N	R	E	R	Y	Y	R	V	S	F	R	E	V	P	T	R	N
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.
Template Conservation
Template Sequence		Q	P	F	D	Y	D	P	N	E	K	S	K	H	K	F	M	V	Q	T	I	F	A	P	P	S	D
Template Known Secondary structure								T	T	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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