Job Description P24232 Confidence 100.00% Date Thu Jan 5 11:41:28 GMT 2012 Rank 4 Aligned Residues 234 % Identity 20% Template c2r6hC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis Resolution 2.95 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.																												.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	R	D	F	R	I	V	A	K	T	P	R	S	A	L	I	T	S	F	E	L	E	P	V	D	G	G	A	V	A	E	Y	R	P	G	Q	Y	L	G	V	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	E	G	F	P	H	Q	E	I	R
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.
Template Sequence		E	W	E	C	E	V	L	S	N	K	N	V	S	T	F	I	K	E	F	V	V	K	L	P	E	G	E	T	X	.	N	F	K	S	G	S	Y	A	Q	I	K	I	P	K	Y	N	I	R	Y	A	D	Y	D	I	Q	D	R	F	R	G	D	W	D	K	X	D	A	W	S	L	T	C	K	N	E	E	E	T	V	R
Template Known Secondary structure													S	S	S	S									S	T	T				.				T	T														G	G	G															T	G	G	G							S
Template Predicted Secondary structure																															.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.																.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Y	S	L	T	R	K	P	D	G	.	K	G	Y	R	I	A	V	K	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	G	Q	V	S	N	W	L	H	N	H	A	N	V	G	D	V	V	K	L	V	A	P	A	G	D	F	F	M	A	V	A	D	D	T	P	V	T	L	I	S	A	G
Query Conservation												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																				.
Template Conservation																																															.																				.
Template Sequence		A	Y	S	X	A	N	Y	P	A	E	G	N	I	I	T	L	N	V	R	I	A	T	P	P	F	D	R	A	A	N	K	W	K	A	G	I	K	P	G	I	S	S	S	Y	I	.	F	S	L	K	P	G	D	K	V	X	X	S	G	P	Y	G	D	F	H	.	I	Q	D	T	D	A	E	X	L	Y	I	G	G	G
Template Known Secondary structure							S		T	T			S															T	T	T	T				T	T											.		T			T	T														.				S	S	S								G
Template Predicted Secondary structure																																															.																				.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		V	G	Q	T	P	M	L	A	M	L	D	T	L	A	K	A	.	G	H	T	A	Q	V	N	W	F	H	A	A	E	N	G	D	V	H	A	F	A	D	E	V	K	E	L	G	Q	S	L	P	R	F	T	A	H	T	W	Y	R	Q	P	S	E	A	D	R	A	K	G	Q	F	D	S	E	G	L	M	D	L	S	K
Query Conservation																		.
Alig confidence																		.																																															.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		A	G	X	A	P	L	R	A	Q	I	L	H	L	F	R	T	L	K	T	G	R	K	V	S	Y	W	Y	G	A	R	S	K	N	E	I	F	Y	E	E	D	F	R	E	I	E	R	E	F	P	N	F	K	F	H	I	A	L	S	D	P	Q	P	E	.	.	.	D	N	W	T	G	Y	V	G	F	I	H	Q	V	I
Template Known Secondary structure		G	G														T	S				S									S	S	G	G	G			S												T	T								S	S			G	G	.	.	.	G				S			S
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350				.	.	.	.	.	.	.	.	.	360	.	.	.	.
		348	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure							.	.	.	.
Query SS confidence							.	.	.	.
Query Sequence		L	E	G	A	F	.	.	.	.	S	D	P	T	M	Q	F	Y	L	C	G	P	V	G	F	M	Q	F	T	A	K	Q	L	V	D	L	G	V	K	Q	E	N	I	H	Y	E	C	F	G
Query Conservation							.	.	.	.
Alig confidence							.	.	.	.
Template Conservation
Template Sequence		Y	D	N	Y	L	K	D	H	D	A	P	E	D	I	E	Y	Y	X	C	G	P	G	P	X	A	N	A	V	K	G	X	L	E	N	L	G	V	P	R	N	X	L	F	F	D	D	F	G
Template Known Secondary structure					T	T	T	T		S		G	G	G																							T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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