Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	K	L	T	A	L	F	V	A	S	T	L	A	L	G	A	A	N	L	A	H	A	A	D	T	T	T	A	A	P	A	D	A	K	P	M	M	H	H	K	G	K	F	G	P	H	Q	D	M	M	F	K	D	L	N	L	T	D	A
Secondary structure
SS confidence
Disorder		?																				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	K	Q	Q	I	R	E	I	M	K	G	Q	R	D	Q	M	K	R	P	P	L	E	E	R	R	A	M	H	D	I	I	A	S	D	T	F	D	K	V	K	A	E	A	Q	I	A	K	M	E	E	Q	R	K	A	N	M	L	A	H	M
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Sequence		E	T	Q	N	K	I	Y	N	I	L	T	P	E	Q	K	K	Q	F	N	A	N	F	E	K	R	L	T	E	R	P	A	A	K	G	K	M	P	A	T	A	E
Secondary structure
SS confidence
Disorder																											?		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3itf chain A Region: 50 - 154 Aligned: 105 Modelled: 103 Confidence: 99.9% Identity: 24% PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein Phyre2 PDB 3qzc chain A Region: 51 - 154 Aligned: 104 Modelled: 104 Confidence: 99.8% Identity: 28% PDB header:signaling protein Chain: A: PDB Molecule:periplasmic protein cpxp; PDBTitle: structure of the periplasmic stress response protein cpxp Phyre2 PDB 3o39 chain A Region: 52 - 147 Aligned: 96 Modelled: 96 Confidence: 99.8% Identity: 93% PDB header:chaperone Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation; PDBTitle: crystal structure of spy Phyre2 PDB 3epv chain B Region: 49 - 151 Aligned: 103 Modelled: 103 Confidence: 99.8% Identity: 12% PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms Phyre2 PDB 3oeo chain D Region: 53 - 143 Aligned: 91 Modelled: 91 Confidence: 99.8% Identity: 99% PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy Phyre2 PDB 3lay chain F Region: 57 - 128 Aligned: 72 Modelled: 72 Confidence: 98.6% Identity: 15% PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 Phyre2 PDB 3g6i chain A Region: 49 - 142 Aligned: 94 Modelled: 93 Confidence: 86.1% Identity: 16% PDB header:unknown function Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution Phyre2 PDB 2qgu chain A Region: 73 - 148 Aligned: 76 Modelled: 76 Confidence: 78.9% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 Phyre2 PDB 3cmn chain A domain 1 Region: 1 - 141 Aligned: 106 Modelled: 108 Confidence: 69.8% Identity: 15% Fold: Zincin-like Superfamily: Metalloproteases ("zincins"), catalytic domain Family: Caur0242-like Phyre2 PDB 2i9l chain L Region: 118 - 142 Aligned: 25 Modelled: 25 Confidence: 59.5% Identity: 40% PDB header:immune system/viral protein Chain: L: PDB Molecule:virion membrane protein m25; PDBTitle: structure of fab 7d11 from a neutralizing antibody against the2 poxvirus l1 protein Phyre2 PDB 2xv9 chain A Region: 57 - 144 Aligned: 69 Modelled: 69 Confidence: 52.9% Identity: 13% PDB header:lipid binding protein Chain: A: PDB Molecule:aba-1a1 repeat unit; PDBTitle: the solution structure of aba-1a saturated with oleic acid Phyre2 PDB 3cmn chain A Region: 1 - 141 Aligned: 106 Modelled: 108 Confidence: 48.7% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of a putative hydrolase with a novel fold2 from chloroflexus aurantiacus Phyre2 PDB 2an7 chain A Region: 55 - 68 Aligned: 14 Modelled: 14 Confidence: 43.4% Identity: 29% PDB header:dna binding protein Chain: A: PDB Molecule:protein pard; PDBTitle: solution structure of the bacterial antidote pard Phyre2 PDB 3iee chain A Region: 58 - 132 Aligned: 68 Modelled: 75 Confidence: 41.8% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of hypothetical protein bf3319 from bacteroides2 fragilis (yp_212931.1) from bacteroides fragilis nctc 9343 at 1.70 a3 resolution Phyre2 PDB 2ami chain A Region: 54 - 108 Aligned: 53 Modelled: 55 Confidence: 33.9% Identity: 25% PDB header:cell cycle Chain: A: PDB Molecule:caltractin; PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin Phyre2 PDB 2dmx chain A Region: 93 - 158 Aligned: 66 Modelled: 66 Confidence: 32.8% Identity: 9% PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 Phyre2 PDB 3oop chain A Region: 46 - 144 Aligned: 99 Modelled: 99 Confidence: 32.4% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262 Phyre2 PDB 2x5q chain A Region: 119 - 144 Aligned: 26 Modelled: 26 Confidence: 24.9% Identity: 35% PDB header:unknown function Chain: A: PDB Molecule:sso1986; PDBTitle: crystal structure of hypothetical protein sso1986 from2 sulfolobus solfataricus p2 Phyre2 PDB 1q44 chain A Region: 74 - 147 Aligned: 61 Modelled: 74 Confidence: 23.7% Identity: 7% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: PAPS sulfotransferase Phyre2 PDB 1pcf chain A Region: 130 - 144 Aligned: 15 Modelled: 15 Confidence: 22.9% Identity: 33% Fold: ssDNA-binding transcriptional regulator domain Superfamily: ssDNA-binding transcriptional regulator domain Family: Transcriptional coactivator PC4 C-terminal domain Phyre2 1 c3itfA_ 2 c3qzcA_ 3 c3o39A_ 4 c3epvB_ 5 c3oeoD_ 6 c3layF_ 7 c3g6iA_ 8 c2qguA_ 9 d3cmna1 10 c2i9lL_ 11 c2xv9A_ 12 c3cmnA_ 13 c2an7A_ 14 c3ieeA_ 15 c2amiA_ 16 c2dmxA_ 17 c3oopA_ 18 c2x5qA_ 19 d1q44a_ 20 d1pcfa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3itfA_ 99.9 24 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein 2 c3qzcA_ 99.8 28 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic protein cpxp; PDBTitle: structure of the periplasmic stress response protein cpxp 3 c3o39A_ 99.8 93 PDB header:chaperone Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation; PDBTitle: crystal structure of spy 4 c3epvB_ 99.8 12 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 5 c3oeoD_ 99.8 99 PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy 6 c3layF_ 98.6 15 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 7 c3g6iA_ 86.1 16 PDB header:unknown function Chain: A: PDB Molecule:putative outer membrane protein, part of carbohydrate PDBTitle: crystal structure of an outer membrane protein, part of a putative2 carbohydrate binding complex (bt_1022) from bacteroides3 thetaiotaomicron vpi-5482 at 1.93 a resolution 8 c2qguA_ 78.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 9 d3cmna1 69.8 15 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Caur0242-like 10 c2i9lL_ 59.5 40 PDB header:immune system/viral protein Chain: L: PDB Molecule:virion membrane protein m25; PDBTitle: structure of fab 7d11 from a neutralizing antibody against the2 poxvirus l1 protein 11 c2xv9A_ 52.9 13 PDB header:lipid binding protein Chain: A: PDB Molecule:aba-1a1 repeat unit; PDBTitle: the solution structure of aba-1a saturated with oleic acid 12 c3cmnA_ 48.7 15 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of a putative hydrolase with a novel fold2 from chloroflexus aurantiacus 13 c2an7A_ 43.4 29 PDB header:dna binding protein Chain: A: PDB Molecule:protein pard; PDBTitle: solution structure of the bacterial antidote pard 14 c3ieeA_ 41.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of hypothetical protein bf3319 from bacteroides2 fragilis (yp_212931.1) from bacteroides fragilis nctc 9343 at 1.70 a3 resolution 15 c2amiA_ 33.9 25 PDB header:cell cycle Chain: A: PDB Molecule:caltractin; PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin 16 c2dmxA_ 32.8 9 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 17 c3oopA_ 32.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2960 protein; PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262 18 c2x5qA_ 24.9 35 PDB header:unknown function Chain: A: PDB Molecule:sso1986; PDBTitle: crystal structure of hypothetical protein sso1986 from2 sulfolobus solfataricus p2 19 d1q44a_ 23.7 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 20 d1pcfa_ 22.9 33 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:Transcriptional coactivator PC4 C-terminal domain 21 d1eh1a_ not modelled 22.2 10 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 22 c1zd1B_ not modelled 22.2 14 PDB header:transferase Chain: B: PDB Molecule:sulfotransferase 4a1; PDBTitle: human sulfortransferase sult4a1 23 d1g3ma_ not modelled 22.1 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 24 d1wova1 not modelled 22.0 17 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:Eukaryotic type heme oxygenase 25 d1akha_ not modelled 21.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 26 c2kz5A_ not modelled 21.5 15 PDB header:transcription Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit; PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b 27 d1wh7a_ not modelled 20.9 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 28 c2crjA_ not modelled 20.9 15 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 29 c2xsdC_ not modelled 20.7 11 PDB header:transcription/dna Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1; PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna 30 c2k5jB_ not modelled 19.8 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1 31 c2kqxA_ not modelled 19.4 10 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 32 d3d1kb1 not modelled 19.3 23 Fold:Globin-like Superfamily:Globin-like Family:Globins 33 c2ctoA_ not modelled 18.7 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:novel protein; PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904 34 c2eqzA_ not modelled 18.7 6 PDB header:transcription Chain: A: PDB Molecule:high mobility group protein b3; PDBTitle: solution structure of the first hmg-box domain from high2 mobility group protein b3 35 c3rh3A_ not modelled 18.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized duf3829-like protein; PDBTitle: crystal structure of an uncharacterized duf3829-like protein (bt_1908)2 from bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 36 d1ek8a_ not modelled 18.3 9 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 37 d1is1a_ not modelled 18.3 10 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 38 d1i94m_ not modelled 17.9 15 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 39 d1j99a_ not modelled 17.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 40 c2k19A_ not modelled 17.8 22 PDB header:antimicrobial protein Chain: A: PDB Molecule:putative piscicolin 126 immunity protein; PDBTitle: nmr solution structure of pisi 41 d1jebb_ not modelled 17.3 38 Fold:Globin-like Superfamily:Globin-like Family:Globins 42 c2da4A_ not modelled 16.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 43 c3fghA_ not modelled 16.7 13 PDB header:transcription Chain: A: PDB Molecule:transcription factor a, mitochondrial; PDBTitle: human mitochondrial transcription factor a box b 44 c2zvpX_ not modelled 16.4 23 PDB header:transferase Chain: X: PDB Molecule:tyrosine-ester sulfotransferase; PDBTitle: crystal structure of mouse cytosolic sulfotransferase msult1d1 complex2 with pap and p-nitrophenol 45 c3lf9A_ not modelled 16.0 9 PDB header:immune system Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161); PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c 46 c2h8kA_ not modelled 15.9 25 PDB header:transferase Chain: A: PDB Molecule:sult1c3 splice variant d; PDBTitle: human sulfotranferase sult1c3 in complex with pap 47 c3d1nK_ not modelled 15.8 22 PDB header:transcription regulator/dna Chain: K: PDB Molecule:pou domain, class 6, transcription factor 1; PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter 48 d2uubm1 not modelled 15.7 16 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 49 d1wqga1 not modelled 15.5 7 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 50 d1lwma_ not modelled 15.1 13 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 51 d2sasa_ not modelled 14.9 35 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 52 d1pq9a_ not modelled 14.9 14 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 53 c1o6uA_ not modelled 14.7 23 PDB header:transferase Chain: A: PDB Molecule:sec14-like protein 2; PDBTitle: the crystal structure of human supernatant protein factor 54 d1lvaa3 not modelled 14.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 55 d1v63a_ not modelled 14.3 12 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 56 d1dd5a_ not modelled 14.1 10 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 57 d1qpwb_ not modelled 13.9 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 58 c1y698_ not modelled 13.7 7 PDB header:ribosome Chain: 8: PDB Molecule:ribosome recycling factor; PDBTitle: rrf domain i in complex with the 50s ribosomal subunit from2 deinococcus radiodurans 59 d1h8ba_ not modelled 13.7 14 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 60 c2zrrA_ not modelled 13.6 24 PDB header:antimicrobial protein Chain: A: PDB Molecule:mundticin ks immunity protein; PDBTitle: crystal structure of an immunity protein that contributes2 to the self-protection of bacteriocin-producing3 enterococcus mundtii 15-1a 61 c2e6oA_ not modelled 13.6 5 PDB header:transcription, cell cycle Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: solution structure of the hmg box domain from human hmg-box2 transcription factor 1 62 d1q20a_ not modelled 13.6 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 63 c1j3xA_ not modelled 13.2 6 PDB header:dna binding protein Chain: A: PDB Molecule:high mobility group protein 2; PDBTitle: solution structure of the n-terminal domain of the hmgb2 64 d1j3xa_ not modelled 13.2 6 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 65 c3ktdC_ not modelled 13.2 12 PDB header:oxidoreductase Chain: C: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of a putative prephenate dehydrogenase (cgl0226)2 from corynebacterium glutamicum atcc 13032 at 2.60 a resolution 66 d1olma1 not modelled 13.1 24 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 67 d1hsma_ not modelled 12.9 10 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 68 c2co9A_ not modelled 12.8 18 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 69 d3proc1 not modelled 12.7 23 Fold:Alpha-lytic protease prodomain-like Superfamily:Alpha-lytic protease prodomain Family:Alpha-lytic protease prodomain 70 c2gwhA_ not modelled 12.7 22 PDB header:transferase Chain: A: PDB Molecule:sulfotransferase 1c2; PDBTitle: human sulfotranferase sult1c2 in complex with pap and2 pentachlorophenol 71 c1wnmA_ not modelled 12.7 21 PDB header:transcription Chain: A: PDB Molecule:fibroin-modulator binding-protein-1; PDBTitle: nmr structure of fmbp-1 tandem repeat 2 in 30%(v/v) tfe2 solution 72 d1hbrb_ not modelled 12.5 31 Fold:Globin-like Superfamily:Globin-like Family:Globins 73 d1wh5a_ not modelled 12.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 74 d1a9we_ not modelled 12.2 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 75 d1ckta_ not modelled 12.2 6 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 76 c3ls1A_ not modelled 11.6 9 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 77 d1gyxa_ not modelled 11.3 21 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 78 d1v65a_ not modelled 11.3 17 Fold:KRAB domain (Kruppel-associated box) Superfamily:KRAB domain (Kruppel-associated box) Family:KRAB domain (Kruppel-associated box) 79 d3bfxa1 not modelled 11.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 80 c1wz6A_ not modelled 11.3 10 PDB header:transcription Chain: A: PDB Molecule:hmg-box transcription factor bbx; PDBTitle: solution structure of the hmg_box domain of murine bobby2 sox homolog 81 d1a4fb_ not modelled 11.2 23 Fold:Globin-like Superfamily:Globin-like Family:Globins 82 c2ctrA_ not modelled 11.1 14 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 9; PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 9 83 d2h8fb1 not modelled 11.1 23 Fold:Globin-like Superfamily:Globin-like Family:Globins 84 c2d7lA_ not modelled 11.0 13 PDB header:gene regulation, dna binding protein Chain: A: PDB Molecule:wd repeat and hmg-box dna binding protein 1; PDBTitle: solution structure of the hmg box domain from human wd2 repeat and hmg-box dna binding protein 1 85 d1k99a_ not modelled 10.5 22 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 86 d1i11a_ not modelled 10.4 6 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 87 d1xv1a_ not modelled 10.2 27 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 88 d1ijwc_ not modelled 10.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 89 d1ls6a_ not modelled 10.1 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 90 c3u3oA_ not modelled 10.1 20 PDB header:transferase Chain: A: PDB Molecule:sulfotransferase 1a1; PDBTitle: crystal structure of human sult1a1 bound to pap and two 3-cyano-7-2 hydroxycoumarin 91 d2p81a1 not modelled 10.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 92 d1sknp_ not modelled 10.0 21 Fold:A DNA-binding domain in eukaryotic transcription factors Superfamily:A DNA-binding domain in eukaryotic transcription factors Family:A DNA-binding domain in eukaryotic transcription factors 93 d1v4wb_ not modelled 10.0 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 94 d1fmja_ not modelled 10.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 95 c2cs1A_ not modelled 9.8 14 PDB header:dna binding protein Chain: A: PDB Molecule:pms1 protein homolog 1; PDBTitle: solution structure of the hmg domain of human dna mismatch2 repair protein 96 d1s7ea1 not modelled 9.7 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 97 c1hmfA_ not modelled 9.4 9 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 98 d1hmfa_ not modelled 9.4 9 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 99 c2yulA_ not modelled 9.4 18 PDB header:transcription Chain: A: PDB Molecule:transcription factor sox-17; PDBTitle: solution structure of the hmg box of human transcription2 factor sox-17

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0