Job Description P77754 Confidence 15.98% Date Thu Jan 5 12:32:31 GMT 2012 Rank 45 Aligned Residues 69 % Identity 9% Template c3lf9A_ PDB info PDB header:immune system Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161); PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c Resolution 2.00 Å

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		57	.	.	60	.	.	.	.	.					.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		L	T	D	A	Q	K	Q	Q	I	.	.	.	.	R	E	I	M	K	G	Q	R	D	Q	M	K	R	P	P	L	E	E	R	R	A	M	H	D	I	I	A	S	D	T	F	D	K	V	K	A	E	A	Q	I	A	K	M	E	E	Q	R	K	A	N	M	L	A	H	M	E	T	Q	N	K
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.
Template Conservation
Template Sequence		G	T	E	E	R	R	K	D	L	V	K	I	V	R	G	E	A	E	G	G	R	V	A	V	R	N	I	A	R	D	A	A	N	D	L	A	A	L	G	K	D	K	E	V	N	W	F	D	I	S	Q	A	L	W	E	I	Q	K	L	T	D	V	A	V	K	K	I	D	E	V	L	A	A
Template Known Secondary structure																																							G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions