Job Description P77754 Confidence 15.83% Date Thu Jan 5 12:32:31 GMT 2012 Rank 47 Aligned Residues 68 % Identity 22% Template c3d1nK_ PDB info PDB header:transcription regulator/dna Chain: K: PDB Molecule:pou domain, class 6, transcription factor 1; PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter Resolution 2.51 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	D	L	N	L	T	D	A	Q	K	Q	Q	I	R	E	I	M	K	G	Q	R	D	Q	M	K	R	P	P	L	E	E	R	R	A	M	H	D	I	I	A	S	D	T	F	D	K	V	K	A	E	A	Q	I	A	K	M	E	E	Q	R	K	A	N	M	L	A	H	M	E	T	Q	N	K	I	Y	N	I	L	T
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	K	L	D	I	T	P	K	S	A	Q	K	L	K	P	V	L	E	K	W	L	N	E	A	E	L	R	N	Q	E	G	Q	Q	N	L	X	E	F	V	G	G	E	P	S	K	K	R	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	S	F	T
Template Known Secondary structure					T		S																						T	T	S	S	S										S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.																										.	.	240	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	Q	K	K	Q	F	N	A	N	F	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	A	I	E	A	L	N	A	Y	F	E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions