Job Description P77754 Confidence 20.70% Date Thu Jan 5 12:32:31 GMT 2012 Rank 29 Aligned Residues 80 % Identity 11% Template c2xsdC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1; PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna Resolution 2.05 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		F	K	D	L	N	L	T	D	A	Q	K	Q	Q	I	R	E	I	M	K	G	Q	R	D	Q	M	K	R	P	P	L	E	E	R	R	A	M	H	D	I	I	A	S	.	D	T	F	D	K	V	K	A	E	A	Q	I	A	K	M	E	E	Q	R	K	A	N	M	L	A	H	M	E	T	Q	N	K	I	Y	N	I	L
Query Conservation																																												.
Alig confidence																																												.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	A	L	Q	L	S	F	K	N	M	C	K	L	K	P	L	L	N	K	W	L	E	E	T	D	S	I	E	V	G	V	K	G	A	L	E	S	H	F	L	K	C	P	K	P	S	A	H	E	I	T	G	L	A	D	S	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure				T	T		S	B																																					S	S														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.																					.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	E	Q	K	K	Q	F	N	A	N	F	E	K	R	L	T	E	R	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	E	V	V	R	V	W	F	C	N	R	R	Q	K	E	K	R	M	T	P
Template Known Secondary structure																		T	B	S
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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