Job Description P76349 Confidence 97.77% Date Thu Jan 5 12:22:12 GMT 2012 Rank 9 Aligned Residues 298 % Identity 11% Template c2xcuC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Resolution 2.42 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		Y	K	A	Y	N	F	N	I	E	K	T	D	F	.	.	V	V	I	H	I	P	D	Q	I	G	D	A	M	A	I	F	P	V	I	R	A	L	E	L	H	K	I	K	H	L	L	I	V	T	S	T	I	N	L	E	V	F	N	A	L	K	L	E	Q	T	K	L	T	L	V	T	M	T	M	Q	D	H	A	T	L
Query Conservation															.	.
Alig confidence															.	.						.																																																							.	.	.	.	.
Template Conservation																						.																																																							.	.	.	.	.
Template Sequence		K	R	F	F	P	K	E	S	L	K	N	C	K	G	A	L	W	V	H	T	.	A	S	I	G	E	F	N	T	F	L	P	I	L	K	E	L	K	R	E	H	R	I	L	L	T	Y	F	S	P	R	A	R	E	Y	L	K	T	K	S	D	F	Y	D	C	L	H	P	L	P	L	D	N	P	F	.	.	.	.	.
Template Known Secondary structure					S			G	G	G	G	G	G	T	T							.	S	S															T	T	T	S							S		T	T							T	T	G	G	G		S								S	S			.	.	.	.	.
Template Predicted Secondary structure																						.																																																							.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	I	K	D	L	A	K	N	I	T	Q	Q	Y	G	T	P	D	L	C	I	E	G	M	R	K	K	N	L	K	T	M	L	F	I	S	Q	L	K	A	K	T	N	F	Q	V	V	G	I	T	M	N	C	F	S	P	L	C	K	N	A	S	S	M	D	Q	K	L	R	A	P	V	P	M	T	W	A	F	M	M
Query Conservation
Alig confidence		.	.	.	.	.	.																									.	.	.																														.	.	.	.
Template Conservation		.	.	.	.	.	.																									.	.	.																														.	.	.	.
Template Sequence		.	.	.	.	.	.	S	V	K	R	F	E	E	L	S	K	P	K	A	L	I	V	V	E	R	E	F	W	P	S	.	.	.	L	I	I	F	T	K	V	P	K	I	L	V	N	A	Y	A	K	G	S	L	I	E	K	I	L	S	K	K	F	.	.	.	.	D	L	I	I	M	R	T	Q	E	D	V	E	K	F
Template Known Secondary structure		.	.	.	.	.	.												S						S							.	.	.							S																			G	G	G		.	.	.	.	S					S	S
Template Predicted Secondary structure		.	.	.	.	.	.																									.	.	.																														.	.	.	.
Template SS confidence
								81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.		.
Predicted Secondary structure																																																																			.													.
Query SS confidence																																																																			.													.
Query Sequence		R	E	A	G	F	P	A	V	R	P	I	Y	E	L	P	L	S	E	D	V	L	D	E	V	R	E	E	M	R	S	L	G	S	Y	I	A	F	N	L	E	G	S	S	Q	E	R	T	F	S	L	S	I	A	E	N	L	I	A	K	I	Q	S	E	T	D	.	I	P	I	V	I	V	H	G	P	K	G	E	.	D
Query Conservation																																																																			.													.
Alig confidence																					.	.	.	.	.	.	.																						.	.																	.													.
Template Conservation																					.	.	.	.	.	.	.																						.	.
Template Sequence		K	T	F	G	A	K	R	V	F	S	C	G	N	L	K	F	I	C	Q	.	.	.	.	.	.	.	K	G	K	G	I	K	L	K	G	E	F	I	V	A	G	S	I	H	T	G	E	.	.	V	E	I	I	L	K	A	F	K	E	I	K	K	T	Y	S	S	L	K	L	I	L	V	P	R	H	I	E	N	A	K
Template Known Secondary structure			T	T	T		S	S							G	G	G				.	.	.	.	.	.	.								S	S										G	G	G	.	.													T	T		T	T								S	S	G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.																						.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.								.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.									.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.						290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.															.					.	.	.	.	.																		.	.
Query SS confidence																					.	.	.	.	.	.	.	.															.					.	.	.	.	.																		.	.
Query Sequence		K	A	R	A	L	V	D	C	Y	N	N	V	Y	R	L	S	L	P	P	.	.	.	.	.	.	.	.	S	I	K	R	S	A	A	I	I	K	D	A	Y	I	.	A	I	T	P	.	.	.	.	.	D	T	S	I	L	H	M	A	S	A	Y	N	T	P	V	V	A	.	.	I	Y	A	D	Y	K	T	R	W	P
Query Conservation																					.	.	.	.	.	.	.	.															.					.	.	.	.	.																		.	.
Alig confidence																					.	.	.	.	.	.	.	.															.					.	.	.	.	.																		.	.
Template Conservation
Template Sequence		I	F	E	K	K	A	R	D	F	G	F	K	T	S	F	F	E	N	L	E	G	D	V	I	L	V	D	R	F	G	I	L	K	E	L	Y	P	V	G	K	I	A	I	V	G	G	T	F	V	N	I	G	G	H	N	L	L	E	P	T	C	W	G	I	P	V	I	Y	G	P	Y	T	H	K	V	N	D	L	K	E
Template Known Secondary structure										T	T						T	T				S	S							T	T						G	G	G								S	S	S	S	T	T											T	T							S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	A	D	V	S	E	S	V	V	V	G	Q	K	I	D	N	I	S	L	D	E	F	A	K	A	L	K	S	V	L	A
Query Conservation
Alig confidence														.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		F	L	E	K	E	G	A	G	F	E	V	K	.	.	.	.	.	.	N	E	T	E	L	V	T	K	L	T	E	L	L	S
Template Known Secondary structure						T	T							.	.	.	.	.	.	S
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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