Job Description P31658 Confidence 99.68% Date Thu Jan 5 11:48:23 GMT 2012 Rank 27 Aligned Residues 156 % Identity 18% Template c3graA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, arac family; PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida Resolution 2.30 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90							.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		G	N	H	P	I	E	T	L	L	P	L	Y	H	L	H	A	A	G	F	.	.	.	.	.	.	E	F	E	V	A	T	I	S	G	L	M	T	K	F	E	Y	W	A	M	P	H	K	D	E	K	V	M	P	F	F	E	Q	H	K	S	L	F	R	N	P	K	K	L	A	D	V	V	A	S	L	N	A	D	S	E
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	F	S	X	A	S	F	T	V	A	X	D	V	L	V	T	A	N	L	L	R	A	D	S	F	Q	F	T	P	L	S	L	D	G	D	R	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	L	G	L	E	L	V	A	T	E	L	S	A	A	A	L	K	E
Template Known Secondary structure		T	B																			S	T	T	S								S	S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	T	S										S	G	G	G	T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.																								.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	A	I	F	V	P	G	G	H	G	A	L	I	G	L	P	E	S	Q	D	V	A	A	A	L	Q	W	A	I	K	N	D	R	F	V	I	S	L	C	H	G	P	A	A	F	L	A	L	R	H	G	D	N	P	L	N	G	Y	S	I	C	A	F	P	D	A	A	D	K	Q	T	P	E	I	G	Y	M	P	G
Query Conservation
Alig confidence														.	.	.																																			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.																																			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	L	L	V	V	C	G	G	L	R	T	.	.	.	P	L	K	Y	P	E	L	D	R	L	L	N	D	C	A	A	H	G	X	A	L	G	G	L	W	N	G	A	W	F	L	G	R	A	.	.	.	.	G	V	L	D	D	Y	G	C	S	I	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S								T	T		.	.	.		S			T	T												T							T	T									.	.	.	.	T			T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.																																			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		H	L	T	W	Y	F	G	E	E	L	K	K	M	.	.	G	M	N	I	I	N	D	D	I	T	G	R	V	H	K	D	R	K	L	L	T	G	D	S	P	F	A	A	N	A	L	G	K	L	A	A	Q	E	M	L	A	A
Query Conservation															.	.
Alig confidence		.	.	.											.	.									.	.	.	.
Template Conservation		.	.	.																					.	.	.	.
Template Sequence		.	.	.	P	E	Q	R	A	S	L	S	E	R	S	P	Q	T	R	I	T	P	A	S	.	.	.	.	F	T	L	D	R	D	R	L	S	A	A	S	P	N	G	A	X	E	L	X	L	G	L	V	R	R	L	Y	G	D
Template Known Secondary structure		.	.	.	G	G	G									T	T					S	S	S	.	.	.	.					T	T					S	S
Template Predicted Secondary structure		.	.	.																					.	.	.	.
Template SS confidence
					153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions