Job Description P31658 Confidence 99.68% Date Thu Jan 5 11:48:23 GMT 2012 Rank 26 Aligned Residues 162 % Identity 13% Template c3er6D_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus Resolution 1.90 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.								.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		G	N	H	P	I	E	T	L	L	P	L	Y	H	L	H	A	A	.	.	.	.	.	.	.	G	F	E	F	E	V	A	T	I	S	G	L	M	T	K	F	E	Y	W	A	M	P	H	K	D	E	K	V	M	P	F	F	E	Q	H	K	S	L	F	R	N	P	K	K	L	A	D	V	V	A	S	L	N	A	D	S
Query Conservation																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	Y	F	A	S	I	I	S	S	L	E	I	L	E	T	A	A	E	F	A	E	F	Q	G	F	M	T	H	V	V	T	P	N	N	R	P	L	I	G	R	G	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	Q	P	T	A	Q	W	Q	S	F	D	F	T
Template Known Secondary structure		T	T	S																		T	T											T	T	S						T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S		G	G	G		S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																							.	.	.	.	.	.	.	.	70	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	A	A	I	F	V	P	G	G	H	G	A	L	I	G	L	P	E	S	Q	D	V	A	A	A	L	Q	W	A	I	K	N	D	R	F	V	I	S	L	C	H	G	P	A	A	F	L	A	L	R	H	G	D	N	P	L	N	G	Y	S	I	C	A	F	P	D	A	A	D	K	Q	T	P	E	I	G	Y	M	P
Query Conservation
Alig confidence														.																																						.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																																						.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	L	I	I	G	S	I	G	D	P	L	.	E	S	L	D	K	I	D	P	A	L	F	D	W	I	R	E	L	H	L	K	G	S	K	I	V	A	I	D	T	G	I	F	V	V	A	K	A	.	.	.	.	G	L	L	Q	Q	N	K	A	V	M	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S								S				.			G	G	G	S														T	T							T	T									.	.	.	.	T			T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.																																						.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	L	T	W	Y	F	G	E	E	L	K	K	M	G	M	N	I	I	N	D	D	I	T	G	R	V	H	K	D	R	K	L	L	T	G	D	S	P	F	A	A	N	A	L	G	K	L	A	A	Q	E	M	L	A	A
Query Conservation
Alig confidence		.	.	.	.																			.
Template Conservation		.	.	.	.																			.
Template Sequence		.	.	.	.	S	Y	F	A	H	L	F	G	E	L	F	P	E	I	M	L	M	T	.	E	Q	K	A	L	I	D	G	N	V	Y	L	S	S	G	P	Y	S	H	S	S	V	M	L	E	I	V	E	E	Y	F	G	K
Template Known Secondary structure		.	.	.	.												T	T	S				T	.	T		S					T	T							S	S
Template Predicted Secondary structure		.	.	.	.																			.
Template SS confidence
						136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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