Job Description P0AFW4 Confidence 100.00% Date Thu Jan 5 11:27:26 GMT 2012 Rank 2 Aligned Residues 120 % Identity 48% Template c2pn0D_ PDB info PDB header:transcription Chain: D: PDB Molecule:prokaryotic transcription elongation factor PDBTitle: prokaryotic transcription elongation factor grea/greb from2 nitrosomonas europaea Resolution 1.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	T	I	I	I	N	D	L	D	A	E	R	I	D	I	L	L	E	Q	P	A	Y	A	G	L	P	I	A	D	A	L	N	A	E	L	D	R	A	Q	M	C	S	P	E	E	M	P	H	D	V	V	T	M	N	S	R	V	K	F	R	N	L	S	D	G	E	V	R	V	R	T	L	V	Y	P	A	K	M	T
Query Conservation
Alig confidence																										.	.	.																																				.
Template Conservation																										.	.	.																																				.
Template Sequence		K	P	K	I	X	I	S	S	L	D	A	E	R	L	E	I	L	L	E	T	L	S	F	P	.	.	.	G	R	D	D	L	E	A	E	L	A	R	A	E	V	V	D	P	E	E	I	P	P	T	V	V	T	X	N	S	T	V	R	F	R	V	.	E	S	S	A	E	E	F	L	T	L	V	Y	P	K	D	V	D
Template Known Secondary structure																					T				T	.	.	.	T										T						G	G	G	S		T	T	B			T	T								.	T	T	S	S		B							G	G	G
Template Predicted Secondary structure																										.	.	.																																				.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	N	T	Q	L	S	V	M	A	P	V	G	A	A	L	L	G	L	R	V	G	D	S	I	H	W	E	L	P	G	G	V	A	T	H	L	E	V	L	E	L	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	G	E	K	I	S	I	L	A	P	V	G	S	A	L	L	G	L	A	Q	G	D	E	I	E	W	P	K	P	G	G	G	V	L	R	V	R	I	V	E	V	T	Y
Template Known Secondary structure		S	S	S	S				T	T	S	T	T					T	T		B	T	T								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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