Job Description P0AFW4 Confidence 99.97% Date Thu Jan 5 11:27:26 GMT 2012 Rank 3 Aligned Residues 122 % Identity 20% Template c2p4vA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.																																		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	R	P	T	I	I	I	N	D	L	D	A	E	R	I	D	I	L	L	E	Q	P	A	Y	A	G	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	D	A	L	N	A	E	L	D	R	A	Q	M	C	S	P	E
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		M	K	T	P	.	.	L	V	T	R	E	G	Y	E	K	L	K	Q	E	L	N	Y	L	W	R	E	E	R	P	E	V	T	K	K	V	T	W	A	A	S	L	G	D	R	S	E	N	A	D	Y	Q	Y	N	K	K	R	L	R	E	I	D	R	R	V	R	Y	L	T	K	C	M	E	N	L	K	I	V	D	Y	S
Template Known Secondary structure						.	.																				T																S		T	T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		1	.	.	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	P	H	D	V	V	T	M	N	S	R	V	K	F	R	N	L	S	D	G	E	V	R	V	R	T	L	V	Y	P	A	K	M	T	D	S	N	T	Q	L	S	V	M	A	P	V	G	A	A	L	L	G	L	R	V	G	D	S	I	H	W	E	L	P	G	G	V	A	T	H	L	E	V	L	E	L	E	Y
Query Conservation
Alig confidence																			.																																																		.
Template Conservation																			.																																																		.
Template Sequence		P	Q	Q	E	G	K	V	F	F	G	A	W	V	E	I	E	N	.	D	D	G	V	T	H	R	F	R	I	V	G	Y	D	E	I	F	G	R	K	D	Y	I	S	I	D	S	P	M	A	R	A	L	L	K	K	E	V	G	D	L	A	V	V	N	T	P	A	G	.	E	A	S	W	Y	V	N	A	I	E	Y
Template Known Secondary structure		S	S	S		S	S		S	S	S								.	T	T								B			S	T	T			S	S	S			B		T	T	S						S	T	T			T	T								S	S		.
Template Predicted Secondary structure																			.																																																		.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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