Job Description P0AFW4 Confidence 75.54% Date Thu Jan 5 11:27:26 GMT 2012 Rank 17 Aligned Residues 100 % Identity 15% Template c1w26B_ PDB info PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins Resolution 2.7 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		M	S	R	P	T	I	I	I	N	D	L	D	A	E	R	I	D	I	L	L	E	Q	P	A	Y	A	G	L	P	I	A	D	A	L	N	A	E	L	D	R	A	Q	M	C	S	P	E	E	M	P	H	D	V	V	T	M	N	S	R	V	K	F	.	.	R	N	L	S	D	G	E	V	R	V	R	T	L	V	Y	P
Query Conservation																																																																.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	K	P	I	V	E	V	T	D	A	D	V	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	L	D	T	L	R	K	Q	Q	A	T	W	K	E	K	D	G	A	V	E	A	E	D	R	V	T	I	D	F	T	G	S	V	D	G	E	E	F	E	G	G	K	A	S	D	F	V	L	A	X	G
Template Known Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T								S	S			T	T											B	T	T	B			T	T										S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.															140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.											.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	M	T	D	S	N	T	Q	L	S	V	M	A	P	V	G	A	A	L	L	G	L	R	V	G	D	S	I	H	W	E	L	.	.	.	.	.	.	.	.	.	.	P	G	G	V	A	T	H	L	E	V	L
Query Conservation																																			.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence		Q	G	R	X	I	P	G	.	.	.	.	.	.	.	.	F	E	D	G	I	K	G	H	K	A	G	E	E	F	T	I	D	V	T	F	P	E	E	Y	H	A	E	N	L	K	G	K	A	A	K	F	A	I	N
Template Known Secondary structure		S			S		T	T	.	.	.	.	.	.	.	.						T	T			T	T											T	T		S		T	T	T	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.									.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions