Job Description P33218 Confidence 16.05% Date Thu Jan 5 11:51:18 GMT 2012 Rank 40 Aligned Residues 114 % Identity 11% Template c3hjlA_ PDB info PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus Resolution 2.40 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																			.	.																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	T	A	R	L	I	L	A	L	V	F	A	A	K	S	D	.	.	G	H	I	D	A	K	E	R	A	A	I	D	Q	Q	L	R	G	A	G	.	V	E	E	Q	G	R	V	L	I	E	Q	A	I	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.	.																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.																				.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	K	A	A	V	L	L	L	S	L	P	E	E	V	S	M	N	I	V	K	E	L	S	E	E	E	L	Q	K	L	F	A	L	A	K	D	L	E	S	V	P	E	E	E	I	E	N	I	A	E	E	L	L	D	E	I	K	K	A	G	I	K	I	K	K	P	E	E	F	I	E	N	I	K	K	V	I	P	P	T
Template Known Secondary structure											S												S														T																							T	T				S													S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
																								151	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.							.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.										.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.										.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	D	P	Q	R	L	A	T	G	V	R	.	.	N	E	E	E	A	L	E	I	Y	.	.	.	.	.	.	F	L	S	C	A	A	I	D	I	D	H	F	M	E	R	S	Y	L	N	A	L	G	D	A	L	K	I	P	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.										.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	E	K	F	R	G	I	L	E	L	G	D	A	E	K	I	L	K	E	I	E	K	V	D	S	R	I	L	A	S	L	L	K	N	E	H	P	Q	T	I	A	L	F	L	S	Q	L	S	P	K	K	S	A	E	I	I	Q	N	L	P	E	E	L	K	K	E	V	V	K	R	I	A	T	L	E	N	V	N	V
Template Known Secondary structure																								T	S										T	T	S										T	T	S											T	S																S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		201	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	R	D	G	I	E	R	D	L	E	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Y	V	K	E	L	A	Q	I	L	L	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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