Job Description P33218 Confidence 13.07% Date Thu Jan 5 11:51:18 GMT 2012 Rank 48 Aligned Residues 71 % Identity 24% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																																						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	R	V	L	I	E	Q	A	I	E	Q	P	L	D	P	Q	R	L	A	T	G	V	R	N	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	L	E	I	Y	F	L	S	C	A	A	I	D	I	D
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	A	R	Q	L	Q	Q	E	L	G	R	E	P	S	Y	E	E	I	A	E	A	M	G	P	G	W	D	A	K	R	V	E	E	T	L	K	I	A	Q	E	P	V	S	L	E	T	P	I	D	F	I	P	D	E	N	L	P	S	P	V	E	A	A	A	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L
Template Known Secondary structure											S	S	S											S		S	S											T	T		S	S		S			S		S	S	S							T	T		T	T																T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.															190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	F	M	E	R	S	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	L	G	D	A	L	K	I	P	Q	D	V	R	D	G	I	E	R	D
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	D	G	R	E	H	T	L	E	E	V	G	A	Y	F	G	V	T	R	E	R	I	R	Q	I	E	N	K
Template Known Secondary structure			T	T	T	T					T	T	S	S	T	T	S	S										T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions