Job Description P0AFS7 Confidence 6.82% Date Thu Jan 5 11:27:10 GMT 2012 Rank 13 Aligned Residues 341 % Identity 13% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	R	Q	P	R	D	V	A	Q	I	L	L	S	V	L	F	L	A	I	M	I	V	A	C	L	W	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	P	F	I	L	G	F	A	W	A	G	T	V	V	I	A	T	W	P	V	L	L	R	L	Q	K	I	M	F	G	R	R	S
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	P	A
Template Known Secondary structure		S	S	S	S																															S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.															.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	V	L	V	M	T	L	L	L	V	M	V	F	I	I	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	V	N	S	I	V	D	G	S	G	P	L	I	K	A	I	S	S	G	D	M	T	L	P	D	L	A	W	L	N	T	I	P	V	I	G	A	K	L	Y	A	G	W	H	N	L
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																																				.	.
Template Sequence		M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	.	.	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L
Template Known Secondary structure																					T	T		S	S																											.	.				T		T	T												S	S	T	T	T	S	T	T	T	T
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	M	G	G	T	A	I	M	A	K	V	R	P	Y	I	G	T	T	T	T	W	F	V	G	Q	A	A	H	I	G	R	F	M	V	H	C	A	L	M	L	L	F	S	A	L	L	Y	W	R	G	E	Q	V	A	Q	G	I	R	H	F	A	T	R	L	A	G	V	R	G	D	A	A	V	L	L	A	A	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G
Template Known Secondary structure																										T			S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		I	R	A	V	A	L	G	V	V	V	T	A	L	V	Q	A	V	L	G	G	I	G	L	A	V	S	G	V	P	Y	A	T	L	L	T	V	L	M	I	L	S	C	L	V	Q	.	L	G	P	L	P	V	L	I	P	A	I	I	W	L	Y	W	T	G	D	T	T	W	G	T	V	L	L	V	W	S	G	V	V	G
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L
Template Known Secondary structure																										T	S	S		S	S	T	T																													G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		T	L	D	N	V	I	R	P	M	L	I	R	M	G	A	D	L	P	L	I	L	I	L	S	G	V	I	G	G	L	I	A	.	.	F	G	M	I	G	L	F	I	G	P	V	L	L	A	V	S	W	R	L	F	A	A	W	V	E	E	V	P	P	P	T	D	Q	P	E	E	I	L	E	E
Query Conservation																																		.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q	L	H	L	A
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S	S	S			S																					T	G	G	G	S	T	T	T			S	S		T	T	T	T	T	S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		402	.																	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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