Job Description P0AFS7 Confidence 2.85% Date Thu Jan 5 11:27:10 GMT 2012 Rank 80 Aligned Residues 193 % Identity 15% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	F	S	A	L	L	Y	W	R	G	E	Q	V	A	Q	G	I	R	H	F	A	T	R	L	A	G	V	R	G	D	A	A	V	L	L	A	A	Q	A	I	R	A	V	A	L	G	V	V	V	T	A	L	V	Q	A	V	L	G	G	I	G	L	A	V	S	G	V	P	Y	A	T	L	L	T	V	L	M	I	L
Query Conservation
Alig confidence																																																															.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		L	L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	.	.	.	.	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M
Template Known Secondary structure																													T	T	S	S	S	T	T																			T	T						T	T	.	.	.	.	S
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		S	C	L	V	Q	L	G	P	L	P	V	L	I	P	A	I	I	W	L	Y	W	T	G	D	T	T	W	G	T	V	L	L	V	W	S	G	V	V	G	T	L	D	N	V	I	R	P	M	L	I	R	M	G	A	D	L	P	L	I	L	I	L	S	G	V	I	G	G	L	I	A	F	G	M	I	G	L	F	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	T	L	V	A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C
Template Known Secondary structure																																												T	S	S			S																							S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	L	A	V	S	W	R	L	F	A	A	W	V	E	E	V	P	P	P	T	D	Q	P	E	E	I	L	E	E	L	G	E	I	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K
Template Known Secondary structure																			S	S				S	T	T	T						T	T	T		S	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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