Phyre 2 alignment of P77774 with d1qksa2

Job Description P77774
Confidence 98.96% Date Thu Jan 5 12:32:43 GMT 2012

Rank 55 Aligned Residues 258

% Identity 12% Template d1qksa2

SCOP info 8-bladed beta-propeller C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase

Resolution 1.28

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	S	T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.
Template Sequence	W	K	V	H	V	A	P	E	D	R	P	T	Q	Q	M	N	D	W	D	L	E	N	L	F	S	V	T	L	R	D	A	G	Q	I	A	L	I	D	G	S	T	Y	E	I	K	T	V	L	D	T	G	Y	A	V	H	I	S	R	.	.	.	.	.	.	.	.	.	L	S	A	S	G	R	Y	L	F	V	I	G	R
Template Known Secondary structure				S	S		G	G	G	S		S	S			S				G	G	G							T	T	T	T							T	T	T										S	S							.	.	.	.	.	.	.	.	.			T	T	S								T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Template SS confidence
	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.										.	.	.	.	.	.	210	.	.	.	.	.	.

	128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	G	K	V	N	M	I	D	L	W	M	K	E	P	T	T	V	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	I	G	S	E	A	R	S	I	E	T	S	K	M	E	G	W	E	D	K	Y	A
Template Known Secondary structure	T	S							T	T	S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S										S	T	T		T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.																																							.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

	208	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence	V	V	G	G	.	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V
Query Conservation					.
Alig confidence					.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	A	G	A	Y	W	P	P	Q	Y	V	I	M	D	G	E	T	L	E	P	K	K	I	Q	S	T	R	G	M	T	Y	D	E	Q	E	Y	H	P	E	P	R	V	A	A	I	L	A	S	H	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T							T	T	T														T	T	T					S											S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	.	.	.	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D
Query Conservation																																																		.	.	.
Alig confidence	.	.	.	.	.																																													.	.	.
Template Conservation	.	.	.	.	.
Template Sequence	.	.	.	.	.	R	P	E	F	I	V	N	V	K	E	T	G	K	I	L	L	V	D	Y	T	D	L	N	N	L	K	T	T	E	I	S	A	E	R	F	L	H	D	G	G	L	D	G	S	H	R	Y	F	I	T	A	A	N	A	R	N	K	L	V	V	I	D	T	K	E	G	K	L	V	A	I	E	D	T	G
Template Known Secondary structure	.	.	.	.	.	S	S							T	T	T	T							T	T		S	S	S										S	S								T	T	S								G	G	G	T							T	T	T	T									S
Template Predicted Secondary structure	.	.	.	.	.
Template SS confidence
						309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

	364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L	I	Q	A	K	D	G	T	V	Y	S	I	T
Query Conservation
Alig confidence								.	.	.	.
Template Conservation								.	.	.	.
Template Sequence	G	Q	T	P	H	P	G	.	.	.	.	R	G	A	N	F	V	H	P	T	F	G	P	V	W	A	T	S
Template Known Secondary structure	S	S	S	B			T	.	.	.	.	T							T	T	T
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
	384	.	.	.	.	.	390					.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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