Phyre 2 alignment of P77774 with c3sbrF

Job Description P77774
Confidence 97.76% Date Thu Jan 5 12:32:43 GMT 2012

Rank 107 Aligned Residues 297

% Identity 11% Template c3sbrF_

PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate

Resolution 2.24 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	W	S	G	G	H	Q	G	E	V	R	V	L	G	V	P	S	M	R	E	L	M	R	I	P	V	F	N	V	D	S	A	T	G	W	G	L	T	N	E	S	R	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	D	S	A	K	F	L	N	G	D	C	H	H	P	H	I
Template Known Secondary structure					B	T	T									T	T	T								S	S	S			T	T	T		T	T	T	B							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	G						B
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	M	T	D	G	K	Y	D	G	K	Y	L	F	I	N	D	K	A	N	S	R	V	A	R	I	R	L	D	I	M	K	C	D	K	M	I	T	V	P	N	V	Q	A	I	H	G	L	R	L	Q	K	V	P	H	T	K	Y	V	F	A	N	A	E	F	I	I	P	H	P	N	D	G	K	V	F	D	L	Q	D	E
Template Known Secondary structure				T	T												T	T	T	T							T	T	T	T									T	T												S	S	B														S	S		S	S	S				T	T	S	T
Template Predicted Secondary structure
Template SS confidence
	134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

				214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure	.	.	.
Query SS confidence	.	.	.
Query Sequence	.	.	.	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I
Query Conservation	.	.	.
Alig confidence	.	.	.
Template Conservation
Template Sequence	N	S	Y	T	M	Y	N	A	I	D	A	E	T	M	E	M	A	F	Q	V	I	V	D	G	N	L	D	N	T	D	A	D	Y	T	G	R	F	A	A	A	T	C	Y	N	S	E	K	A	F	D	L	G	G	M	M	R	N	E	R	D	W	V	V	V	F	D	I	H	A	V	E	A	A	V	K	A	G	D	F	I
Template Known Secondary structure	T										T	T	T		S								S	S									S	S	S	S							S		T	T			S	S					T		S	S																			T			B
Template Predicted Secondary structure
Template SS confidence
	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.														.	.
Predicted Secondary structure																																																				.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	.	S	E	G	Y	L	H	W	I	N	V	E	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F
Query Conservation																																																				.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.																																												.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.
Template Sequence	T	L	G	D	S	.	.	.	K	T	P	V	L	D	G	R	K	K	D	G	K	D	S	K	F	T	R	Y	V	P	V	P	K	N	P	H	G	C	N	T	S	S	D	G	K	Y	F	I	A	A	G	K	L	S	P	T	C	S	M	I	A	I	D	K	L	P	D	L	F	A	G	K	L	A	D	P	R	D	V	I
Template Known Secondary structure			T	T		.	.	.								S		B	T	T	B			S	S							S	S	S								T	T	S								T	T	S	S	B						G	G	G						T	T			S		G	G	G	G
Template Predicted Secondary structure						.	.	.
Template SS confidence
	294	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

	357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L	I	Q	A	.	K	D	G	T	V	Y	S	I	T
Query Conservation																											.
Alig confidence												.															.
Template Conservation												.
Template Sequence	V	G	E	P	E	L	G	L	G	P	L	.	H	T	T	F	D	G	R	G	N	A	Y	T	T	L	F	I	D	S	Q	V	V	K	W	N
Template Known Secondary structure					B			S				.						S	S	S							T	T	T	T
Template Predicted Secondary structure												.
Template SS confidence
	371	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions