Phyre 2 alignment of P77774 with c3ottB

Job Description P77774
Confidence 97.61% Date Thu Jan 5 12:32:43 GMT 2012

Rank 109 Aligned Residues 280

% Identity 12% Template c3ottB_

PDB info PDB header:transcription Chain: B: PDB Molecule:two-component system sensor histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A
Query Conservation
Alig confidence												.																																																																			.	.
Template Conservation												.																																																																			.	.
Template Sequence	K	G	F	Y	W	F	G	G	A	N	G	.	L	I	R	F	T	D	P	A	G	E	R	H	D	A	I	W	Y	R	M	G	D	K	T	Y	P	L	S	H	N	R	I	R	H	I	Y	E	D	K	E	Q	Q	L	W	I	A	T	D	G	S	I	N	R	Y	D	Y	A	T	R	Q	F	I	H	Y	N	I	V	.	.
Template Known Secondary structure	T	S							T	T		.					S		T	T			S								T	T		S	S	S			S		S									T	T	S							T	T							T	T	T	T									.	.
Template Predicted Secondary structure												.																																																																			.	.
Template SS confidence
	361	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.

	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	.	.
Query Conservation																																																																															.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	T	G	T	Y	N	T	N	W	T	Y	Y	I	F	E	D	T	A	G	Q	L	W	I	S	T	C	L	G	G	I	F	V	V	D	K	H	K	L	M	Q	S	T
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S			B		S	S								T	T	S							S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																						438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																					.																			.	.	.	.	.
Query SS confidence																																					.																			.	.	.	.	.
Query Sequence	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	.	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	.	.	.	.	.	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D
Query Conservation																																					.																			.	.	.	.	.
Alig confidence																																					.																			.	.	.	.	.
Template Conservation
Template Sequence	S	G	Q	Y	I	A	E	Q	N	Y	S	V	H	N	G	L	S	G	M	F	I	N	Q	I	I	P	D	N	E	G	N	V	W	V	L	L	Y	N	N	K	G	I	D	K	I	N	P	R	T	R	E	V	T	K	L	F	A	D	E	L	T	G	E	K	S	P	N	Y	L	L	C	D	E	D	G	L	L	W	V	G
Template Known Secondary structure	S	S	S				S					T	T	T	T		S		S									S	S	S							T	T		S	S						T	T	T	T						S	T	T	T	S	S	G	G	G									T	T	S
Template Predicted Secondary structure
Template SS confidence
	481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560

	301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	.	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L
Query Conservation																																		.
Alig confidence																																		.												.														.
Template Conservation																																														.														.
Template Sequence	F	H	G	G	V	M	R	I	N	P	K	D	E	S	Q	Q	S	I	S	F	G	S	F	S	N	N	E	I	L	S	M	T	C	V	K	N	S	I	W	V	S	T	T	N	G	.	L	W	I	I	D	R	K	T	M	D	A	R	Q	.	Q	N	T	N	K	R	F	T	S	L	L	F	D	P	K	E	D	C	V	Y
Template Known Secondary structure		T	T							T	T	T	T								S	S		S	S										T	T							T	T		.						T	T	T						.								S						T	T	T	T
Template Predicted Secondary structure																																														.														.
Template SS confidence
	561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.		.	.	.	.	610	.	.	.	.	.	.	.	.		.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.

	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	Q	A	K	D	G	T	V	Y	S	I	T
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence	L	G	G	A	D	G	.	F	G	I	S	H
Template Known Secondary structure				B	T		.
Template Predicted Secondary structure							.
Template SS confidence
	640	.	.	.	.	.		.	.	.	.	650

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions