Job Description P77774 Confidence 98.86% Date Thu Jan 5 12:32:43 GMT 2012 Rank 61 Aligned Residues 301 % Identity 10% Template c3mmyE_ PDB info PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 Resolution 1.65 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		S	T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	.	.	.	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G
Query Conservation																				.	.	.
Alig confidence																				.	.	.																																											.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		D	I	E	V	T	S	S	P	D	D	S	I	G	C	L	S	F	S	P	P	T	L	P	G	N	F	L	I	A	G	S	W	A	N	D	V	R	C	W	E	V	Q	D	S	G	Q	T	I	P	K	A	Q	Q	M	H	T	G	P	V	L	D	V	C	.	.	.	.	.	.	W	S	D	D	G	S	K	V	F	T	A
Template Known Secondary structure						S	S			S	S										T	T	S	S	S								T	T	S									T	T	S											S	S							.	.	.	.	.	.			T	T	S	S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G
Query Conservation
Alig confidence																																																																				.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		S	C	D	K	T	A	K	M	W	D	L	S	S	N	Q	A	I	Q	I	A	Q	H	D	A	P	V	K	T	I	H	W	I	K	A	P	N	Y	S	C	V	M	T	G	S	W	D	K	T	L	K	F	W	D	T	R	S	S	N	P	M	M	V	L	Q	L	P	.	.	.	E	R	C	Y	C	A	D	V	I	Y	P
Template Known Secondary structure			T	T	S							T	T	T	T									S	S											S	S									T	T	S							S	S		S	S		S						S	.	.	.	S									T	T
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S
Query Conservation
Alig confidence																																																		.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	V	V	A	T	A	E	R	G	L	I	V	Y	Q	L	E	N	Q	P	S	E	F	R	R	I	E	S	P	L	K	H	Q	H	R	C	V	A	I	F	K	D	K	Q	N	K	P	T	.	.	.	G	F	A	L	G	S	I	E	G	R	V	A	I	H	Y	I	N	P	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								G	G	G								S	S	S										S		S	S											T	T	S				.	.	.							S	S	S							S	S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D	S	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	P	A	K	D	N	F	T	F	K	C	H	R	S	N	S	A	P	Q	D	I	Y	A	V	N	G	I	A	F	H	P	V	H	G	T	L	A	T	V	G	S	D	G	R	F	S	F	W	D	K	D	A	R	T	K	L	K	T	S	E	Q	L	D	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						S						S																			T	T	T								T	T	S							T	T	T	T										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		366	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		G	F	Q	T	E	P	V	A	A	D	G	K	.	L	L	I	Q	A	K	D	G	T	V
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		P	I	S	A	C	C	F	N	H	N	G	N	I	F	A	Y	A	S	S	Y	D	W	S
Template Known Secondary structure										T	T	S	S										S	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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