Job Description P77774 Confidence 98.54% Date Thu Jan 5 12:32:43 GMT 2012 Rank 78 Aligned Residues 322 % Identity 11% Template c3iz6a_ PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	V	E	N	Q	F	T	P	T	T	A	W	S	T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	T	A	V	S	F	N	P	T	D	L	V	C	C	R	T	L	Q	G	H	S	G	K	V	Y	S	L	D	W	T	P	E	K	N	W	I	V	S	A	S	Q	D	G	R	L	I	V	W	N	A	L	T	S	Q	K	T	H	A	I	K	L	H	C	P	W	V	M	E	C	A	F	A	P	N	G	Q	S	V	A
Template Known Secondary structure		G	G	G																			S	S									T	T	S	S							T	T	S							T	T	T	T											T	T								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	G	L	D	S	A	C	S	I	F	N	L	S	S	Q	A	D	R	D	G	N	M	P	V	S	R	V	L	T	G	H	K	G	Y	A	S	S	C	Q	Y	V	P	D	Q	E	T	R	L	I	T	G	S	G	D	Q	T	C	V	L	W	D	V	T	T	G	Q	R	I	S	I	F	G	S	E	F	P	S	G	H
Template Known Secondary structure					S	S	S											S	S				S	S	T	T			B					S	S						B			S	S	S	S	S							T	T	S							T	T	T											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		196	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.																																																									.	.	.
Query SS confidence							.	.	.	.	.																																																									.	.	.
Query Sequence		G	E	S	A	P	.	.	.	.	.	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	.	.	.	V	V	F	A	L	A	Y	N	G	N	L
Query Conservation							.	.	.	.	.																																																									.	.	.
Alig confidence							.	.	.	.	.																																																									.	.	.
Template Conservation
Template Sequence		T	A	D	V	L	S	L	S	I	N	S	L	N	A	N	M	F	I	S	G	S	C	D	T	T	V	R	L	W	D	L	R	I	T	S	R	A	V	R	T	Y	H	G	H	E	G	D	I	N	S	V	K	F	F	P	D	G	Q	R	F	G	T	G	S	D	D	G	T	C	R	L	F	D	M	R	T	G	H	Q	L
Template Known Secondary structure			S									S	S	S									T	T	S							T	T	T	T											S	S									T	T	S	S							S	S	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320						.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	.	.	.	.	.	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S
Query Conservation																																																							.	.	.	.	.
Alig confidence																																																							.	.	.	.	.
Template Conservation
Template Sequence		Q	V	Y	N	R	E	P	D	R	N	D	N	E	L	P	I	V	T	S	V	A	F	S	I	S	G	R	L	L	F	A	G	Y	S	N	G	D	C	Y	V	W	D	T	L	L	A	E	M	V	L	N	L	G	T	L	Q	N	S	H	E	G	R	I	S	C	L	G	L	S	S	D	G	S	A	L	C	T	G	S	W
Template Known Secondary structure									S	S	S			S	S		S		S						S	S	S	S							T	T	S							T	T	T										S		S	S												S	S	S	S							T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	N	L	K	I	W	A	F	S	G	H	R	K	I
Template Known Secondary structure		T	S									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions