Phyre 2 alignment of P77774 with c3i2nA

Job Description P77774
Confidence 98.99% Date Thu Jan 5 12:32:43 GMT 2012

Rank 53 Aligned Residues 297

% Identity 13% Template c3i2nA_

PDB info PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 92; PDBTitle: crystal structure of wd40 repeats protein wdr92

Resolution 1.95 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	.	.	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y
Query Conservation																											.	.
Alig confidence																											.	.																																		.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence	G	F	N	Y	T	V	F	D	C	K	W	V	P	C	S	A	K	F	V	T	M	G	N	R	G	T	G	V	I	Q	L	Y	E	I	Q	H	G	D	L	K	L	L	R	E	I	E	K	A	K	P	I	K	C	G	T	F	G	A	T	S	L	.	.	.	.	Q	Q	R	Y	L	A	T	G	D	F	G	G	N	L	H
Template Known Secondary structure			S	S									T	T	S	S																				S	S	S										S	S								T	T			T	.	.	.	.	T	T								T	T	S
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
	16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90	.

	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	W	N	L	E	A	P	E	M	P	V	Y	S	V	K	G	H	K	E	I	I	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	G	I	G	G	L	G	I	G	E	G	A	P	E	I	V	T	G	S	R
Template Known Secondary structure				T	T	S		S	S		S							S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	G	G	G			.										T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																																					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

	213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	D	G	T	V	K	V	W	D	P	R	Q	K	D	D	P	V	A	N	M	E	P	V	Q	G	E	N	K	R	D	C	W	T	V	A	F	G	N	A	Y	N	Q	E	E	R	V	V	C	A	G	Y	D	N	G	D	I	K	L	F	D	L	R	N	M	A	L	R	W	E	T	N	I	K	N	G	V	C	S	L	E	F
Template Known Secondary structure	T	S							T	T	S		S	S		S							T	T	S																.										T	T	S							T	T	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

	293	.							.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.								.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure			.	.	.	.	.	.																																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.																																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence	G	N	.	.	.	.	.	.	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	.	.	.	.	.	.	.	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	.	.	.	.	.	.	.
Query Conservation			.	.	.	.	.	.																																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																																								.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	R	K	D	I	S	M	N	K	L	V	A	T	S	L	E	G	K	F	H	V	F	D	M	R	T	Q	H	P	T	K	G	F	A	S	V	S	E	K	A	H	K	S	T	V	W	Q	V	R	H	L	P	Q	N	R	E	L	F	L	T	A	G	G	A	G	G	L	H	L	W	K	Y	E	Y	P	I	Q	R	K	D
Template Known Secondary structure	S		S	S	S	S									S	T	T												T	T	T											S	S									T	T										T	T	S											S
Template Predicted Secondary structure
Template SS confidence
	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

											353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380		.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.																										.				.
Query SS confidence	.	.	.	.	.	.	.	.	.	.																										.				.
Query Sequence	.	.	.	.	.	.	.	.	.	.	D	G	R	F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	.	L	L	I	.	Q	A	K	D	G	T	V	Y	S	I	T
Query Conservation	.	.	.	.	.	.	.	.	.	.																										.				.
Alig confidence	.	.	.	.	.	.	.	.	.	.																										.				.
Template Conservation
Template Sequence	S	E	G	I	E	M	G	V	A	G	S	V	S	L	L	Q	N	V	T	L	S	T	Q	P	I	S	S	L	D	W	S	P	D	K	R	G	L	C	V	C	S	S	F	D	Q	T	V	R	V	L	I
Template Known Secondary structure	T	T	S																			S	S									S	S	S	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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