Job Description P77774 Confidence 96.54% Date Thu Jan 5 12:32:43 GMT 2012 Rank 124 Aligned Residues 275 % Identity 9% Template c3hfqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. Resolution 1.96 Å

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		71	.	.	.	.	.	.	.	.	80							.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		V	V	Y	A	A	D	R	A	G	L	.	.	.	.	.	.	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	L	F	G	T	Y	T	K	K	T	S	Q	G	I	Y	Q	G	T	L	D	T	T	A	K	T	L	T	N	D	G	L	.	.	.	.	.	.	.	L	A	A	T	Q	N	P	T	Y	L	A	L	S	A	K	D	C	L	Y	S	V	D	K	E	D	D	E	G	G	I	A	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	S	S											T	T	T	T								.	.	.	.	.	.	.					S									T	T										T	T						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	.	D	N	G	R	V	S	A	V	L	M	E	Q
Query Conservation																																																																					.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	Q	I	D	G	Q	T	A	H	K	L	N	T	V	V	A	P	G	T	P	P	A	Y	V	A	V	D	E	A	R	Q	L	V	Y	S	A	N	Y	H	K	G	T	A	E	V	X	K	I	A	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T												S				S						T	T	T	T							T	T	T	T									T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	.	.	.	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D
Query Conservation																											.	.	.
Alig confidence																											.	.	.
Template Conservation
Template Sequence		D	G	A	L	T	L	T	D	T	V	Q	H	S	G	H	G	P	R	P	E	Q	D	G	S	H	I	H	Y	T	D	L	T	P	D	N	R	L	A	V	I	D	L	G	S	D	K	V	Y	V	Y	N	V	S	D	A	G	Q	L	S	E	Q	S	V	L	T	X	E	A	G	F	G	P	R	H	L	V	F	S	P	D
Template Known Secondary structure		T	S															S	S	T	T		S	S										T	T	S							T	T	T	T									T	T	S												T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.																						.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	.	.	.	R	F
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		G	Q	Y	A	F	L	A	G	E	L	S	S	Q	I	A	S	L	K	Y	D	T	Q	T	G	A	F	T	Q	L	G	I	V	K	T	I	P	A	D	Y	T	A	H	N	G	A	A	A	I	R	L	S	H	D	G	H	F	L	Y	V	S	N	R	G	Y	N	T	L	A	V	F	A	V	T	A	D	G	H	L	T	L
Template Known Secondary structure		S	S							T	T	T	T									T	T	T	T										S	S		T	T			S											T	T	S									T	T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.		.	.	.	.	.	390	.
Predicted Secondary structure																							.								.
Query SS confidence																							.								.
Query Sequence		V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	.	L	L	I	Q	A	K	D	.	G	T	V	Y	S	I	T
Query Conservation																							.								.
Alig confidence																							.								.
Template Conservation
Template Sequence		I	Q	Q	I	S	T	E	G	D	F	P	R	D	F	D	L	D	P	T	E	A	F	V	V	V	V	N	Q	N	T	D	N	A	T	L	Y	A
Template Known Secondary structure								S	S	S									T	T	S	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions