Job Description P77774 Confidence 98.02% Date Thu Jan 5 12:32:43 GMT 2012 Rank 95 Aligned Residues 315 % Identity 10% Template c3greA_ PDB info PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain Resolution 1.80 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	.	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K
Query Conservation																							.
Alig confidence																							.																							.	.	.
Template Conservation																																														.	.	.
Template Sequence		A	T	L	M	E	N	E	P	N	S	I	T	S	S	A	V	S	P	G	E	T	P	Y	L	I	T	G	S	D	Q	G	V	I	K	I	W	N	L	K	E	I	I	V	G	.	.	.	E	V	Y	S	S	S	L	T	Y	D	C	S	S	T	V	T	Q	I	T	M	I	P	N	F	D	A	F	A	V	S	S	K	D
Template Known Secondary structure						T	T	T	T	S										S	S	S								T	T	S												T	T	.	.	.				S		S						S	S									T	T	S	S							T	T
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		1073	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.				.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	I	I	V	L	K	V	N	H	Y	Q	Q	E	S	E	V	K	F	L	N	C	E	C	I	R	K	I	N	L	K	N	F	G	K	N	E	Y	A	V	R	M	R	A	F	V	N	E	E	K	S	L	L	V	A	L	T	N	L	S	R	V	I	I	F	D	I	R	T	L	E	R	L	Q	I	I	E	N	S	P
Template Known Secondary structure		S													T	T															G	G	G	G	S	S													S	S									T	T	S							T	T	T											G
Template Predicted Secondary structure
Template SS confidence
		1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L
Query Conservation
Alig confidence																																																													.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		R	H	G	A	V	S	S	I	C	I	D	E	E	C	C	V	L	I	L	G	T	T	R	G	I	I	D	I	W	D	I	R	F	N	V	L	I	R	S	W	S	F	G	D	H	A	P	I	T	H	V	E	V	C	Q	F	Y	G	K	.	.	.	.	N	S	V	I	V	V	G	G	S	S	K	T	F	L	T	I	W
Template Known Secondary structure		G	G										T	T	S								T	T	S							T	T	T	T							B		T	T											T	T	T		T	.	.	.	.	T								S	T	T
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.					.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.																														.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		N	F	V	K	G	H	C	Q	Y	A	F	I	N	S	D	E	Q	P	S	M	E	H	F	L	P	I	E	K	G	L	E	E	L	N	F	C	G	I	R	S	L	N	A	L	S	T	I	S	V	S	N	D	K	I	L	L	T	D	E	A	T	S	S	I	V	M	F	S	L	N	E	L	S	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	T	T								S	S	S	S				G	G	G	G	S		B		S	S	G	G	G								S	G	G	G	G							T	T							G	G	G	T							T	T		G	G	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		1306	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.				.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	.	.	.	K	L	L	I	Q	A	K	D	G	T	V	Y	S	I
Query Conservation																																																									.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	S	S	K	A	V	I	S	P	F	S	D	V	F	I	P	T	Q	V	T	A	N	L	T	M	L	L	R	K	M	K	H	D	I	I	N	S	I	S	T	C	E	V	D	E	T	P	L	L	V	A	C	D	N	S	G	L	I	G	I	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	G																			T	T																					S	S	S	S								T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														1379	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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