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Job DescriptionP77774
Confidence43.70%DateThu Jan 5 12:32:43 GMT 2012
Rank163Aligned Residues280
% Identity13%Templatec3fw0A_
PDB info PDB header:lyaseChain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase; PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate)
Resolution2.52 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   95....100........ .110.........120.........130.........140.........150.........160.........170..
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Query Sequence  VSLAEKDGWFSKEP. . ALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQ
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Template Sequence  FHVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGL. . . . . . . . . . . . . . . . . GPIEEDT
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TT
GGGG


S

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TT



TTTB
TT

BS
GGG.................
S

S

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   499500.........510.........520.........530.........540.........550.... .....560.
 
   173......180.........190.........200.........210.........220.........230.........240.........250..
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Query Sequence  ALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV
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Template Sequence  ILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV
Template Known Secondary structure 
TTT


TTT
SS
TT

TTTT
TT
SS

S
TT


SSTT

SS
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   562.......570.........580.........590.........600.........610.........620.........630.........640.
 
   253.. ....260.........270......... 280.........290.........300.........310.........320......
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Query Sequence  VVN. GVVFALAYNGNLTALDLRSGQIMW. . . . . KRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL
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Template Sequence  EPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF
Template Known Secondary structure 
TTT


SS


TT




SSS

TTSSTTTTGGGTTTT

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   642.......650.........660.........670.........680.........690.........700.........710.........720.
 
   327. .330.........340.........350.........360..... ....370.........380. .
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Query Sequence  LT. . . . . . . . . . . . . . . . . . . . SPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS. . . GFQTEPVAADGKLLIQ. A
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Template Sequence  VREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA
Template Known Secondary structure 

GGGTT
TT



TT
S



TTT



SSS

SS
TTSS
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   722.......730.........740.........750.........760.........770.........780.........790.........800.
 
   383......390.
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Query Sequence  KDGTVYSIT
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Template Sequence  HTNTVWKFT
Template Known Secondary structure  SS

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   802.......810
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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