Phyre 2 alignment of P77774 with c3fm0A

Job Description P77774
Confidence 97.43% Date Thu Jan 5 12:32:43 GMT 2012

Rank 113 Aligned Residues 307

% Identity 7% Template c3fm0A_

PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:protein ciao1; PDBTitle: crystal structure of wd40 protein ciao1

Resolution 1.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A
Query Conservation
Alig confidence																																																.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence	G	R	V	P	A	H	P	D	S	R	C	W	F	L	A	W	N	P	A	G	T	L	L	A	S	C	G	G	D	R	R	I	R	I	W	G	T	E	G	D	S	W	I	C	K	S	V	.	.	.	.	.	L	S	E	G	H	Q	R	T	V	R	K	V	A	W	S	P	C	G	N	Y	L	A	S	A	S	F	D	A
Template Known Secondary structure						S	T	T	S									T	T	S	S							T	T	S									T	T								.	.	.	.	.			S	S		S	S									T	T	S	S							T	T	S
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.						.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence	Q	V	Y	A	L	N	T	S	D	G	.	.	.	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A
Query Conservation											.	.	.
Alig confidence											.	.	.
Template Conservation
Template Sequence	T	T	C	I	W	K	K	N	Q	D	F	E	C	V	T	T	L	E	G	H	E	N	E	V	K	S	V	A	W	A	P	S	G	N	L	L	A	T	C	S	R	D	K	S	V	W	V	W	E	V	D	E	E	D	E	Y	E	C	V	S	V	L	N	S	H	T	Q	D	V	K	H	V	V	W	H	P	S	Q	E	L
Template Known Secondary structure																					S	S									T	T	S	S							T	T	S									T	T	S													S									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence	L	A	S	A	S	Y	D	D	T	V	K	L	Y	R	E	E	E	D	D	W	V	C	C	A	T	L	E	G	H	E	S	T	V	W	S	L	A	F	D	P	S	G	Q	.	.	.	.	.	.	.	R	L	A	S	C	S	D	D	R	T	V	R	I	W	R	Q	Y	L	P	G	N	E	Q	G	V	A	C	S	P	S
Template Known Secondary structure						T	T	S									T	T												S	S									T	T	S	S	.	.	.	.	.	.	.							T	T	S										T	T		T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.										.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.
Query Sequence	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	.	.	.	.	.	.	.	.	.	F	V
Query Conservation																																																																						.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	W	K	C	I	C	T	L	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	H	S	R	T	I	Y	D	I	A	W	C	Q	L	T	G	A	L	A	T	A	C	G	D	D	A	I	R	V	F	Q	E	D	P	N	S	D	P	Q	Q	P	T	F	S	L	T	A
Template Known Secondary structure									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S									T	T	T								T	T	S									T	T	S		T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	241	.	.	.	.	.	.	.	.																									250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

	358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380		.	.	.	.	.			.	.	.	.	390	.	.
Predicted Secondary structure																	.								.						.	.
Query SS confidence																	.								.						.	.
Query Sequence	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	.	A	D	G	K	L	L	I	.	Q	A	K	D	G	.	.	T	V	Y	S	I	T	R
Query Conservation																	.								.						.	.
Alig confidence																	.								.						.	.
Template Conservation
Template Sequence	H	L	H	Q	A	H	S	Q	D	V	N	C	V	A	W	N	P	K	E	P	G	L	L	A	S	C	S	D	D	G	E	V	A	F	W	K	Y	Q	R
Template Known Secondary structure			T	T	S	S	S	S									S	S	S	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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