Job Description P77774 Confidence 98.04% Date Thu Jan 5 12:32:43 GMT 2012 Rank 94 Aligned Residues 285 % Identity 12% Template c3fhcA_ PDB info PDB header:transport protein/hydrolase Chain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214 Resolution 2.80 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																																														.	.
Query SS confidence																				.	.	.	.																																														.	.
Query Sequence		G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	.	.	.	.	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	.	.	S	G	G	H	V	Y	I	G	S	E	K
Query Conservation																				.	.	.	.																																														.	.
Alig confidence																				.	.	.	.																																														.	.
Template Conservation
Template Sequence		P	M	K	F	P	I	H	H	L	A	L	S	C	D	N	L	T	L	S	A	C	M	M	S	S	E	Y	G	S	I	I	A	F	F	D	V	R	T	F	S	N	E	A	Q	K	R	P	F	A	Y	H	K	L	L	K	D	A	G	G	M	V	I	D	M	K	W	N	P	T	V	P	S	M	V	A	V	C	L	A	D
Template Known Secondary structure				S	S									T	T	S										T	T	T									G	G	G	G	G	S							S							S	S	G	G	G									S	S		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	I	A	V	L	Q	V	T	E	T	V	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	A	T	L	P	S	T	V	A	V	T	S	V	C	W	S	P	K	G	K	Q	L	A
Template Known Secondary structure		S								S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G									T	T	S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.																																												.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D
Query Conservation
Alig confidence																			.	.	.
Template Conservation																			.	.	.
Template Sequence		V	G	K	Q	N	G	T	V	V	Q	Y	L	P	T	L	Q	E	.	.	.	K	K	V	I	P	C	P	P	F	Y	E	S	D	H	P	V	R	V	L	D	V	L	W	I	G	T	Y	V	F	A	I	V	Y	A	A	A	D	G	T	L	E	T	S	P	D	V	V	M	A	L	L	P	K	K	E	E	K	H	P	E
Template Known Secondary structure					T	T	S							T	T				.	.	.								T	T	S		T	T	S												T	T									T	T			S	S	S											S	S		T	T
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D	S	S	G	F	Q
Query Conservation
Alig confidence																							.	.	.	.	.																																											.
Template Conservation																							.	.	.	.	.																																											.
Template Sequence		I	F	V	N	F	M	E	P	C	Y	G	S	C	T	E	R	Q	H	H	Y	Y	.	.	.	.	.	L	S	Y	I	E	E	W	D	L	V	L	A	A	S	A	A	S	T	E	V	S	I	L	A	R	Q	S	D	Q	I	N	W	E	S	W	L	L	E	D	S	S	R	.	A	E	L	P	V	T	D	K	S	D	D
Template Known Secondary structure									S	S		B			S	S	S						.	.	.	.	.					T	T	T	T							T	T	B	S	B								T	T	S	S									G	G	G		.		B			B		T	T	S		B
Template Predicted Secondary structure																							.	.	.	.	.																																											.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.
		369	370	.	.							.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure						.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.
Query Sequence		T	E	P	V	.	.	.	.	.	.	A	A	D	G	K	L	L	I	Q	A	K	D	G	T	V	Y	S	I	T
Query Conservation						.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	P	M	G	V	V	V	D	Y	T	N	A	P	V	L	M	L	L	S	T	D	G	V	L	C	P	F	Y
Template Known Secondary structure																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions