Job Description P77774 Confidence 96.25% Date Thu Jan 5 12:32:43 GMT 2012 Rank 128 Aligned Residues 238 % Identity 11% Template c3eweC_ PDB info PDB header:protein transport,structural protein Chain: C: PDB Molecule:nucleoporin seh1; PDBTitle: crystal structure of the nup85/seh1 complex Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																															.	.	.	.	.
Query SS confidence																															.	.	.	.	.
Query Sequence		S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	.	.	.	.	.	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L
Query Conservation																															.	.	.	.	.
Alig confidence																															.	.	.	.	.
Template Conservation
Template Sequence		Y	G	R	H	V	A	T	C	S	S	D	Q	H	I	K	V	F	K	L	D	K	D	T	S	N	W	E	L	S	D	S	W	R	A	H	D	S	S	I	V	A	I	D	W	A	S	P	E	Y	G	R	I	I	A	S	A	S	Y	D	K	T	V	K	L	W	E	E	W	N	K	L	C	T	L	N	D	S	K	G	S
Template Known Secondary structure		S	S	S							S	S	S									T	T	T													S	S										T	T	T									S	S	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L
Query Conservation
Alig confidence																																			.	.	.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		L	Y	S	V	K	F	A	P	A	H	L	G	L	K	L	A	C	L	G	N	D	G	I	L	R	L	Y	D	A	L	E	P	S	.	.	.	.	.	D	L	R	S	W	T	L	T	S	E	M	K	V	S	D	F	C	L	S	W	C	P	S	P	E	K	L	A	V	S	A	L	E	Q	A	I	I	Y	Q	R	L	H
Template Known Secondary structure										T	T	T		S	B						T	T				B							T	T	.	.	.	.	.	S																															S	S
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.						.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E
Query Conservation
Alig confidence																																																				.	.
Template Conservation																																																				.	.
Template Sequence		V	A	A	K	L	P	G	H	K	S	L	I	R	S	I	S	W	A	P	S	Y	Q	L	I	A	T	G	C	K	D	G	R	I	R	I	F	K	I	T	E	N	L	Q	V	E	L	L	S	G	E	.	.	V	W	S	V	S	W	N	L	T	G	T	I	L	S	S	A	G	D	D	G	K	V	R	L	W	K	A	T
Template Known Secondary structure										S	S																			T	T	S													B			B				.	.								S	S	S								T	T	S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		353	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	R	F	V	A	Q	Q	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	S	N	E	F	K	C	M	S	V
Template Known Secondary structure		T	T	S
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions