Job Description P77774 Confidence 98.85% Date Thu Jan 5 12:32:43 GMT 2012 Rank 65 Aligned Residues 276 % Identity 13% Template c3ei4D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex Resolution 3.30 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A
Query Conservation
Alig confidence																																														.	.	.	.	.																										.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.																										.	.	.	.	.	.
Template Sequence		P	S	T	V	A	V	G	S	K	G	G	D	I	M	L	W	N	F	G	I	K	D	K	P	T	F	I	K	G	I	G	A	G	G	S	I	T	G	L	K	F	N	P	L	.	.	.	.	.	N	T	N	Q	F	Y	A	S	S	M	E	G	T	T	R	L	Q	D	F	K	G	N	I	L	R	.	.	.	.	.	.
Template Known Secondary structure		S	S							S	S	S							S	S	S		S									S	S	S								B		T	T	.	.	.	.	.		T	T							T	T	S							T	T	T					.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.																										.	.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	A	S	S	D	T	I	N	I	W	F	C	S	L	D	V	S	A	S	S	R	M	V	V	T	G	D	N	V	G	N	V	I	L	L	N	M	D	G	K	E	L	W	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	T	T										T	T	T	T							S	S	S							T	T			B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																					193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L
Query Conservation
Alig confidence																																							.	.
Template Conservation																																							.	.
Template Sequence		L	R	M	H	K	K	K	V	T	H	V	A	L	N	P	C	C	D	W	F	L	A	T	A	S	V	D	Q	T	V	K	I	W	D	L	R	Q	.	.	V	R	G	K	A	S	F	L	Y	S	L	P	H	R	H	P	V	N	A	A	C	F	S	P	D	G	A	R	L	L	T	T	D	Q	K	S	E	I	R	V	Y
Template Known Secondary structure					S	S	S									T	T	S	T	T							T	T	S							T	T	T	.	.			S	S	S			S						S	S									T	T	S	S							S	S	S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.								.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.													.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	.	.	.	.	.	.	.	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	.	.	.	.	.	.	.	.	.	.	.	.	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	.	K	V	D	S	S	G	F	Q
Query Conservation																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		S	A	S	Q	W	D	C	P	L	G	L	I	P	H	P	H	R	H	F	Q	H	L	T	P	I	K	A	A	W	H	P	R	Y	N	L	I	V	V	G	R	Y	P	D	P	N	F	K	S	C	T	P	Y	E	L	R	T	I	D	V	F	D	G	N	S	G	K	M	M	C	Q	L	Y	D	P	E	S	S	G	I	S
Template Known Secondary structure			T	T		S	S	S		S											T	T	S									S	S	S	S										T	T	S			S	S	S				S							S	S	S										T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		369	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		T	E	.	P	V	A	A	D	G	K	L	L	I	Q	A	K	D	G	T	V	Y	S	I	T	R
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		S	L	N	E	F	N	P	M	G	D	T	L	A	S	A	M	G	Y	H	I	L	I	W	S	Q
Template Known Secondary structure								S	S	S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions