Job Description P77774 Confidence 98.78% Date Thu Jan 5 12:32:43 GMT 2012 Rank 69 Aligned Residues 311 % Identity 6% Template c3ei3B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex Resolution 2.30 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	.	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K
Query Conservation																				.
Alig confidence																				.																																														.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		H	R	T	A	S	P	F	D	R	R	V	T	S	L	E	W	H	P	T	H	P	T	T	V	A	V	G	S	K	G	G	D	I	I	L	W	D	Y	D	V	Q	N	K	T	S	F	I	Q	G	M	G	P	G	D	A	I	T	G	M	K	F	N	Q	F	.	.	.	.	.	N	T	N	Q	L	F	V	S	S	I	R
Template Known Secondary structure									S	S									S	S		T	T							B	T	S							T	T	S	T	T									S	T	T		B								T	T	.	.	.	.	.										T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	.	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		G	A	T	T	L	R	D	F	S	G	S	V	I	Q	V	F	A	K	T	D	S	W	D	Y	W	Y	C	C	V	D	V	S	V	S	R	Q	M	L	A	T	G	D	S	T	G	R	L	L	L	L	G	L	D	G	H	E	I	F	K	E	K	L	H	K	A	K	V	T	H	A	E	F	N	P	R	C	D	W	L	M
Template Known Secondary structure		T							T	T	S												S	S										T	T	T	T							T	T	S							T	T	S									S	S	S									S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N
Query Conservation
Alig confidence																				.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		A	T	S	S	V	D	A	T	V	K	L	W	D	L	R	N	I	K	.	.	.	.	.	D	K	N	S	Y	I	A	E	M	P	H	E	K	P	V	N	A	A	Y	F	N	P	T	D	S	T	K	L	L	T	T	D	Q	R	N	E	I	R	V	Y	S	S	Y	D	W	S	K	P	D	Q	I	I	I	H	P	H	R
Template Known Secondary structure						T	T	S							G	G	G			.	.	.	.	.	S	T	T									S	S									T	T	T	S								S	S	S							T	T	B	T	T	S		S							B
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.						.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	.	V	D	S	S	G
Query Conservation																																																																												.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	F	Q	H	L	T	P	I	K	A	T	W	H	P	M	Y	D	L	I	V	A	G	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	D	Q	L	L	L	N	D	K	R	T	I	D	I	Y	D	A	N	S	G	G	L	V	H	Q	L	R	D	P	N	A	A	G
Template Known Secondary structure				T	T	S									S	S	S	S							B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T		T	T										T	T	T									B	T	T	B		S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.																							.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		367	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		F	Q	T	E	.	P	V	A	A	D	G	K	L	L	I	Q	A	K	D	G	T	V	Y	S	I	T	R
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		I	I	S	L	N	K	F	S	P	T	G	D	V	L	A	S	G	M	G	F	N	I	L	I	W	N	R
Template Known Secondary structure										T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions