Job Description P77774 Confidence 34.91% Date Thu Jan 5 12:32:43 GMT 2012 Rank 168 Aligned Residues 345 % Identity 8% Template c3ei1A_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna damage-binding protein 1; PDBTitle: structure of hsddb1-drddb2 bound to a 14 bp 6-42 photoproduct containing dna-duplex Resolution 2.80 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		F	T	P	T	T	A	W	S	T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	.	.	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G
Query Conservation																																																.	.
Alig confidence																																																.	.											.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		P	S	F	E	L	L	H	K	E	M	L	G	G	E	I	I	P	R	S	I	L	M	T	T	F	E	S	S	H	Y	L	L	C	A	L	G	D	G	A	L	F	Y	F	G	L	N	I	E	T	G	L	L	S	D	R	K	K	V	.	.	.	.	.	.	T	L	G	T	Q	P	T	V	L	R	T	F	R	S	L	S
Template Known Secondary structure		T	T											S	S												T	T									T	T	S									T	T	T										.	.	.	.	.	.				S	S										T	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.							630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	N	V	F	A	C	S	D	R	P	T	V	I	Y	S	S	N	H	K	L	V	F	S	N	V	N	L	K	E	V	N	Y	M	C	P	L	N	S	D	G	Y	P	D	S	L	A	L	A	N	N	S	T	L	T	I	G	T	I	D	E	I	Q	K	L	H	I	R	T	V	P	L	Y	E	S	P	R	K	I	C
Template Known Secondary structure									S	S	S							S	S	S	S						B	S	S	S											S	S	S	T	T							S	S										S	S	S									S	S
Template Predicted Secondary structure
Template SS confidence
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.																																							.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query Sequence		P	T	T	A	F	G	A	A	V	V	G	G	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	.	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		Y	Q	E	V	S	Q	C	F	G	V	L	S	S	R	I	E	V	Q	D	T	S	G	G	T	T	A	L	R	P	S	A	S	T	Q	A	L	S	S	S	V	S	S	S	K	L	F	G	E	E	V	E	V	H	N	L	L	I	I	D	Q	H	T	F	E	V	L	H	A	H	Q	F	L	Q	N	E	Y	A	L	S	L
Template Known Secondary structure				G	G	G	T														S	S	S	S				S	S			T	T	T	S		S																								T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		726	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.
					237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		V	S	C	K	L	G	K	D	P	N	T	Y	F	I	V	G	T	A	M	V	Y	P	E	E	A	E	P	K	Q	G	R	I	V	V	F	Q	Y	S	D	G	K	L	Q	T	V	A	E	K	E	V	K	G	A	V	Y	S	M	V	E	F	N	G	K	L	L	A	S	I	N	S	T	V	R	L	Y	E	W	T	T	E
Template Known Secondary structure							T	T															T	T		S	S													S	S											S	S									T	T							T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		817	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.
		314		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																																			.	.								.
Query SS confidence			.																																			.	.								.
Query Sequence		V	.	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	.	.	I	N	V	E	D	G	R	.	F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L	I	Q	A	K	D	G	T	V	Y	S
Query Conservation			.																																			.	.								.
Alig confidence			.																																			.	.								.
Template Conservation
Template Sequence		K	E	L	R	T	E	C	N	H	Y	N	N	I	M	A	L	Y	L	K	T	K	G	D	F	I	L	V	G	D	L	M	R	S	V	L	L	L	A	Y	K	P	M	E	G	N	F	E	E	I	A	R	D	F	N	P	N	W	M	S	A	V	E	I	L	D	D	D	N	F	L	G	A	E	N	A	F	N	L	F	V
Template Known Secondary structure		S												S									T	T							S	S	B									T	T	T	T										S		B										T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		897	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.
		390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	Q	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		977	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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