Job Description P77774 Confidence 95.28% Date Thu Jan 5 12:32:43 GMT 2012 Rank 135 Aligned Residues 318 % Identity 9% Template c3c5mC_ PDB info PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 Resolution 2.60 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	.	.	.	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q
Query Conservation																																																																	.	.	.
Alig confidence								.	.								.																													.	.	.																	.	.	.
Template Conservation								.	.								.																													.	.	.
Template Sequence		A	K	G	D	V	I	.	.	T	L	N	F	E	T	F	.	V	D	S	D	T	Q	V	K	V	T	R	L	T	P	T	D	I	I	C	H	R	N	Y	F	Y	Q	K	C	.	.	.	F	T	Q	D	G	K	K	L	L	F	A	G	D	F	D	G	N	R	N	Y	Y	L	L	N	L	E	T	Q	Q	A	V	Q	L
Template Known Secondary structure			T	T				.	.								.			T	T	T								S		T	T	S							T	T	S			.	.	.	B		T	T	S									T	T	S	S								T	T	T	T
Template Predicted Secondary structure								.	.								.																													.	.	.
Template SS confidence
		2	.	.	.	.	.			.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure														.																																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	V	A	G	E	A	L	S	R	P	V	.	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	.	.	.	.	.	.	.	.	.	.	.
Query Conservation														.																																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	E	G	K	G	D	N	T	F	G	G	F	I	S	T	D	E	R	A	F	F	Y	V	K	N	E	L	N	L	X	K	V	D	L	E	T	L	E	E	Q	V	I	Y	T	V	D	E	E	W	K	G	Y	G	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	L	K	R	D	W	Q	P	L	T	S	W
Template Known Secondary structure				S	S		B		T	T	T					T	T	S	S							T	T	T							T	T	T											T	T											T	T	S	S									G	G	G						S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
													213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.								.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	.	.	.	.	.	.	.	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	F	A	E	F	Y	H	T	N	P	T	C	R	L	I	K	V	D	I	E	T	G	E	L	E	V	I	H	Q	D	T	A	W	L	G	H	P	I	Y	R	P	F	D	D	S	T	V	G	F	C	H	E	G	P	H	D	L	V	D	A	R	X	W	L	V	N	E	D	G	S	N	V	R	K	I	K	E	H	A
Template Known Secondary structure										T											T	T	T										S	S									T	T											S		S	S	S		S								T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.																.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	E	S	C	T	H	E	F	W	I	P	D	G	S	A	X	A	Y	V	S	Y	F	K	G	Q	T	D	R	V	I	Y	K	A	N	P	E	T	L	E	N	E	E	V	X	V	X	P	P	C	S	H	L	X	S	N	F	D	G	S	L	X	V	G	D	G	C	D	A	N	I	E	N	D	P	F	L	Y	V	L
Template Known Secondary structure		T	T										T	T	S	S									T	T	T										T	T	T											S								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.			.	.	.	.	390	.
Predicted Secondary structure																																								.	.									.	.
Query SS confidence																																								.	.									.	.
Query Sequence		G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	.	.	L	L	I	Q	A	K	D	G	.	.	T	V	Y	S	I	T
Query Conservation																																								.	.									.	.
Alig confidence																																								.	.									.	.
Template Conservation
Template Sequence		N	T	K	A	K	S	A	Q	K	L	C	K	H	S	T	S	W	D	V	L	D	G	D	R	Q	I	T	H	P	H	P	S	F	T	P	N	D	D	G	V	L	F	T	S	D	F	E	G	V	P	A	I	Y	I	A	D
Template Known Secondary structure			T	T	T	T	B														B	T	T	B	S	S	T	T								T	T	S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions