Job Description P77774 Confidence 99.49% Date Thu Jan 5 12:32:43 GMT 2012 Rank 23 Aligned Residues 289 % Identity 9% Template c3bwsA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 Resolution 1.99 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N
Query Conservation
Alig confidence																																								.	.	.
Template Conservation																																								.	.	.
Template Sequence		T	G	F	Q	P	K	S	V	R	F	I	D	N	T	R	L	A	I	P	L	L	E	D	E	G	X	D	V	L	D	I	N	S	G	Q	T	V	R	.	.	.	L	S	P	P	E	K	Y	K	K	K	L	G	F	V	E	T	I	S	I	P	E	H	N	E	L	W	V	S	Q	X	Q	A	N	A	V	H	V	F	D
Template Known Secondary structure			S	S		B						S	S	S	S						B	T	T	S	S	S						T	T	T						.	.	.									T	T										G	G	G	T							G	G	G	T
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	.	G	D	N	G
Query Conservation																																																																													.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	T	L	A	Y	K	A	T	V	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	W	S	K	I	L	L	Y	D	P	I	R	D	L	V	Y	C	S	N	W	I	S	E
Template Known Secondary structure		T	T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S								T	T	T	T							T	T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.																																												.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																					.	.																																																									.	.	.
Template Conservation																					.	.
Template Sequence		D	I	S	V	I	D	R	K	T	K	L	E	I	R	K	T	D	K	I	.	.	G	L	P	R	G	L	L	L	S	K	D	G	K	E	L	Y	I	A	Q	F	S	A	S	N	Q	E	S	G	G	G	R	L	G	I	Y	S	X	D	K	E	K	L	I	D	T	I	G	P	P	G	N	K	R	H	I	V	S	G	N
Template Known Secondary structure								T	T	T	T										.	.	S									T	T	S	S									S		T	T		S										T	T	T	T																			S
Template Predicted Secondary structure																					.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
			292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340																.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R
Query Conservation		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	E	N	K	I	Y	V	S	D	X	C	C	S	K	I	E	V	Y	D	L	K	E	K	K	V	Q	K	S	I	P	V	F	D	K	P	N	T	I	A	L	S	P	D	G	K	Y	L	Y	V	S	C	R	G	P	N	H	P	T	E	G	Y	L	K	K	G	L	V	L	G	K	V	Y	V	I	D	T	T	T	D	T
Template Known Secondary structure		S	T	T							T	T	T	T							T	T	T	T									S	S	S								T	T	S	S												T	T	T		T	T	S			S	S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L	I	Q	A	.	K	D	G	T	V	Y	S	I	T	R
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		V	K	E	F	W	E	A	G	N	Q	P	T	G	L	D	V	S	P	D	N	R	Y	L	V	I	S	D	F	L	D	H	Q	I	R	V	Y	R	R
Template Known Secondary structure									S	S	S								T	T	S								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions