Job Description P77774 Confidence 96.80% Date Thu Jan 5 12:32:43 GMT 2012 Rank 123 Aligned Residues 276 % Identity 11% Template c3bg1E_ PDB info PDB header:protein transport, hydrolase Chain: E: PDB Molecule:protein sec13 homolog; PDBTitle: architecture of a coat for the nuclear pore membrane Resolution 3.00 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	.	.	.	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L
Query Conservation																																										.	.	.
Alig confidence																																										.	.	.
Template Conservation
Template Sequence		D	M	I	H	D	A	Q	M	D	Y	Y	G	T	R	L	A	T	C	S	S	D	R	S	V	K	I	F	D	V	R	N	G	G	Q	I	L	I	A	D	L	R	G	H	E	G	P	V	W	Q	V	A	W	A	H	P	M	Y	G	N	I	L	A	S	C	S	Y	D	R	K	V	I	I	W	R	E	E	N	G	T	W
Template Known Secondary structure											G	G	G								T	T	T									T	T												S	S										G	G	G	S	S							T	T	S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	S	H	E	H	A	G	H	D	S	S	V	N	S	V	C	W	A	P	H	D	Y	G	L	I	L	A	C	G	S	S	D	G	A	I	S	L	L	T	Y	T	G	E	G	Q	W	E	V	K	K	I	N	N	A	H	T	I	G	C	N	A	V	S	W	A	P	A	V	V	P	P	S	G	Q	K	P	N	Y	I
Template Known Secondary structure											S	S										T	T	T		S							S	S	S									S	S	S							B	T	T	S	S	S	S		B														S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	F	A	S	G	G	C	D	N	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	W	K	E	E	E	D	G	Q	W	K	E	E	Q	K	L	E	A	H	S	D	W	V	R	D	V	A	W	A	P	S	I	G	L	P	T	S
Template Known Secondary structure			B					B	T	T	S	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S									B			S	S											S	S		S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.																															.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.					.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																						.	.	.	.															.																								.
Query SS confidence																						.	.	.	.															.																								.
Query Sequence		R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	.	.	.	.	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	.	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	.	E	D	G	R	F	V	A	Q	Q	K	V	D
Query Conservation																						.	.	.	.															.																								.
Alig confidence																						.	.	.	.															.																								.
Template Conservation
Template Sequence		T	I	A	S	C	S	Q	D	G	R	V	F	I	W	T	C	D	D	A	S	S	N	T	W	S	P	K	L	L	H	K	F	N	D	V	V	W	H	V	S	W	S	I	T	A	N	I	L	A	V	S	G	G	D	N	K	V	T	L	W	K	E	S	V	D	G	Q	W	V	C	I	S	D	V	N
Template Known Secondary structure								T	T											S	S	S												S	S									T	T	T								S	S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions