Job Description P77774 Confidence 98.96% Date Thu Jan 5 12:32:43 GMT 2012 Rank 56 Aligned Residues 273 % Identity 12% Template c3acpA_ PDB info PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome Resolution 2.00 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template Sequence		Q	M	R	R	F	I	L	G	T	T	E	G	D	I	K	V	L	D	S	N	F	N	L	Q	R	E	I	D	Q	.	.	.	.	.	.	.	.	A	H	V	S	E	I	T	K	L	K	F	F	P	S	G	E	A	L	I	S	S	S	Q	D	M	Q	L	K	I	W	S	V	K	D	G	S	N	P	.	.	.	.	.
Template Known Secondary structure		S	S								T	T	S							T	T								T	T	.	.	.	.	.	.	.	.	S	S	S	S									T	T	S	S							T	T	S							T	T	T					.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.																																							.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	L	I	G	H	R	A	T	V	T	D	I	A	I	I	D	R	G	R	N	V	L	S	A	S	L	D	G	T	I	R	L	W	E	C	G	T	G	T	T	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S									T	T	T	T							T	T	S							T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																								172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
																	228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	T	F	N	R	K	E	N	P	H	D	G	V	N	S	I	A	L	F	V	G	T	D	R	Q	L	H	E	I	S	T	S	K	K	N	N	L	E	F	G	T	Y	G	K	Y	V	I	A	G	H	V	S	G	V	I	T	V	H	N	V	F	S	K	E	Q	T	I	Q	L	P	S	K	F	T	C	S	C	N	S	L
Template Known Secondary structure							T	T		T	T	S										S					T	T	T	S	S	S					T	T		S	S		T	T								T	T	S							T	T	T										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		293							.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.																						.	.
Query SS confidence			.	.	.	.	.	.																						.	.
Query Sequence		G	.	.	.	.	.	.	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	.	.	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D	S
Query Conservation			.	.	.	.	.	.																						.	.
Alig confidence			.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		T	V	D	G	N	N	A	N	Y	I	Y	A	G	Y	E	N	G	M	L	A	Q	W	D	L	R	S	P	E	C	P	V	G	E	F	L	I	N	E	G	T	P	I	N	N	V	Y	F	A	A	G	A	L	F	V	S	S	G	F	D	T	S	I	K	L	D	I	I	S	D	P	E	S	E	R	P	A	I	E	F	E
Template Known Secondary structure					S	S		T	T							T	T	S							T	T	S	T	T	S		S					S	S	T	T	S									T	T							T	T	T											S	S		S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		365	.										.	.	.	370	.	.	.	.	.					.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.										.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.										.	.	.	.
Query Sequence		S	G	.	.	.	.	.	.	.	.	.	F	Q	T	E	P	V	A	A	D	.	.	.	.	G	K	L	L	I	Q	A	K	D	G	T	V	Y	S	I	T
Query Conservation				.	.	.	.	.	.	.	.	.										.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation
Template Sequence		T	P	T	F	L	V	S	N	D	D	E	V	S	Q	F	C	Y	V	S	D	D	E	S	N	G	E	V	L	E	V	G	K	N	N	F	C	A	L	Y	N
Template Known Secondary structure		S							S	S												S	S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions