Job Description P77774 Confidence 96.86% Date Thu Jan 5 12:32:43 GMT 2012 Rank 120 Aligned Residues 289 % Identity 12% Template c2zkqa_ PDB info PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	.	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K
Query Conservation																					.
Alig confidence									.												.																																			.	.	.
Template Conservation									.																																															.	.	.
Template Sequence		R	G	T	L	K	G	H	.	G	W	V	T	Q	I	A	T	T	P	Q	F	P	D	M	I	L	S	A	S	R	D	K	T	I	I	M	W	K	L	T	R	D	E	T	N	Y	G	I	P	Q	R	A	L	R	G	.	.	.	H	S	H	F	V	S	D	V	V	I	S	S	D	G	Q	F	A	L	S	G	S	W	D
Template Known Secondary structure									.			B								S	S	T	T							T	T	S							S	S	S	S											S	S	S	.	.	.				S		S						T	T	S	S							T	T
Template Predicted Secondary structure									.																																															.	.	.
Template SS confidence
		8	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	.	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		G	T	L	R	L	W	D	L	T	T	G	T	T	T	R	R	F	V	G	H	T	K	D	V	L	S	V	A	F	S	S	D	N	R	Q	I	V	S	G	S	R	D	K	T	I	K	L	W	N	T	L	G	V	C	K	Y	T	V	Q	D	E	S	S	E	W	V	S	C	V	R	F	S	P	N	S	S	N	P	I	I
Template Known Secondary structure									S	S	S	S	S										S	S								S	S	S	S							T	T	T							T	T	T																				T	T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	C	G	W	D	K	L	V	K	V	W	N	L	A	N	C	K	L	K	T	N	H	I	G	H	T	G	Y	L	N	T	V	T	V	S	P	D	G	S	L	C	A	S	G	G	K	D	G	Q	A	M	L	W	D	L	N	E	G	K	H	L	Y	T	L	D	G	G	D	I	I	N	A	L	C	F	S	P	N	R
Template Known Secondary structure						T	T	S							T	T	T		S									S	S									T	T	S	S							T	T	S							T	T	T	T								S	S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320											.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	.	.	.	.	.	.	.	.	.	.	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I
Query Conservation																																			.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.
Template Sequence		Y	W	L	C	.	.	.	.	.	.	.	A	A	T	G	P	S	I	K	I	W	D	L	E	G	K	I	I	V	D	E	L	K	Q	E	V	I	S	T	S	S	K	A	E	P	P	Q	C	T	S	L	A	W	S	A	D	G	Q	T	L	F	A	G	Y	T	D	N	L	V	R	V	W
Template Known Secondary structure						.	.	.	.	.	.	.			S	S	S										S	S	S																	S	S									S	S	T	T							T	T	B
Template Predicted Secondary structure						.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.								250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions