Job Description P77774 Confidence 98.57% Date Thu Jan 5 12:32:43 GMT 2012 Rank 77 Aligned Residues 306 % Identity 8% Template c2xznR_ PDB info PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Resolution 3.93 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		S	T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	.	.	.	.	.	.	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																							.
Template Conservation																																																															.
Template Sequence		K	R	G	I	L	E	G	H	S	D	W	V	T	S	I	V	A	G	F	S	Q	K	E	N	E	D	S	P	V	L	I	S	G	S	R	D	K	T	V	M	I	W	K	L	Y	E	E	E	Q	N	G	Y	F	G	I	P	H	K	A	L	T	.	G	H	N	H	F	V	S	D	L	A	L	S	Q	E	N	C	F	A
Template Known Secondary structure										S	S											S	S	T	T											T	T	S									S	S			S	S	B	S									.			S	S									S	S	T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	.	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		I	S	S	S	W	D	K	T	L	R	L	W	D	L	R	T	G	T	T	Y	K	R	F	V	G	H	Q	S	E	V	Y	S	V	A	F	S	P	D	N	R	Q	I	L	S	A	G	A	E	R	E	I	K	L	W	N	I	L	G	E	C	K	F	S	S	A	E	K	E	N	H	S	D	W	V	S	C	V	R	Y	S
Template Known Secondary structure						T	T	S							T	T	S	S											S									S	S	T	T							T	T	S							S	S	S								T	T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	I	M	K	S	A	N	K	V	Q	P	F	A	P	Y	F	A	S	V	G	W	D	G	R	L	K	V	W	N	T	N	F	Q	I	R	Y	T	F	K	A	H	E	S	N	V	N	H	L	S	I	S	P	N	G	K	Y	I	A	T	G	G	K	D	K	K	L	L	I	W	D	I	L	N	L	T	Y	P	Q	R	E
Template Known Secondary structure						S		S				S	S									T	T	S							T	T	T										S	S									T	T	S	S							T	T								S	S			S	S		S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		282	.	.	.	.	.	.	.	290	.	.	.				.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320															.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure														.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	G	S	V	N	D	F	I	V	D	G	.	.	.	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G
Query Conservation														.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	A	G	S	T	I	N	Q	I	A	F	N	P	K	L	Q	W	V	A	V	G	T	D	Q	G	V	K	I	F	N	L	M	T	Q	S	K	A	P	V	C	T	I	E	A	E	P	I	T	K	A	E	G	Q	K	G	K	N	P	Q	C	T	S	L	A	W	N	A	L	G	K	K	L	F	A	G	F	T	D	G
Template Known Secondary structure					S	S									S	S	S								S	S							S	S	S			S		S								S	G	G	G	B	T	T	B			S											S	S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		345	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	H	W	I	N	V	E	D	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	R	T	F	S	F	E	T	S	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions