Job Description P77774 Confidence 98.73% Date Thu Jan 5 12:32:43 GMT 2012 Rank 72 Aligned Residues 318 % Identity 8% Template c2pm9A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat Resolution 3.30 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A
Query Conservation
Alig confidence																							.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence		G	T	V	D	A	N	F	S	T	D	S	S	L	E	L	W	S	L	L	A	A	.	.	.	.	.	.	D	S	E	K	P	I	A	S	L	Q	V	D	S	K	F	N	D	L	D	W	S	H	N	N	K	I	I	A	G	A	L	D	N	G	S	L	E	L	Y	S	T	N	E	A	N	N	A	I	N	S	M	A	R
Template Known Secondary structure		S				S	S												S	S	S	G	.	.	.	.	.	.	G	G		S		S						S	S									S	S	S	S							S	S	S								S	S	T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50							.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.								.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		G	E	A	L	S	R	P	V	V	S	D	G	L	.	.	.	.	.	.	.	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	.	.	.	.	.	.	.	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G
Query Conservation															.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	N	H	S	S	S	V	K	T	V	K	F	N	A	K	Q	D	N	V	L	A	S	G	G	N	N	G	E	I	F	I	W	D	M	N	K	C	T	E	S	P	S	N	Y	T	P	L	T	P	G	Q	S	M	S	S	V	D	E	V	I	S	L	A	W	N	Q	S	L	A	H	V	F	A	S	A	G	S	S	N
Template Known Secondary structure					S	S	S									S	S	S	T	T	B						S	S	S				B		B	T	T	T	T	S	S		T	T	T				B					S			S	S										S	S		T	T						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																																															.	.	.
Template Conservation
Template Sequence		F	A	S	I	W	D	L	K	A	K	K	E	V	I	H	L	S	Y	T	S	P	N	S	G	I	K	Q	Q	L	S	V	V	E	W	H	P	K	N	S	T	R	V	A	T	A	T	G	S	D	N	D	P	S	I	L	I	W	D	L	R	N	A	N	T	P	L	Q	T	L	N	Q	G	H	Q	K	G	I	L	S	L
Template Known Secondary structure								T	T	T	T												S	S													S	S		T	T									S	S	S								T	T	S	T	T	S		S	B				S			S	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
							292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																										.	.																								.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																										.	.																								.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	.	.	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																										.	.																								.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																										.	.																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	W	C	H	Q	D	E	H	L	L	L	S	S	G	R	D	N	T	V	L	L	W	N	P	E	S	A	E	Q	L	S	Q	F	P	A	R	G	N	W	C	F	K	T	K	F	A	P	E	A	P	D	L	F	A	C	A	S	F	D	N	K	I	E	V	Q	T	L	Q	N	L	T	N	T	L	D	E	S	K	E	K
Template Known Secondary structure					S	S		S	S							S	S	S							S	S	S										S	S	S									T	T		T	T							S	S	S							S						S	S					S
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
						356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L	I	Q	A	K	D	G	T	V	Y	S	I	T	R
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		P	S	V	F	H	L	Q	A	P	T	W	Y	G	E	P	S	P	A	A	H	W	A	F	G	G	K	L	V	Q	I	T	P	D	G	K	G	V	S	I	T	N
Template Known Secondary structure				S	S						S	T	T				S							T	T	T					B		T	T	S	S		B			B
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions