Job Description P77774 Confidence 36.85% Date Thu Jan 5 12:32:43 GMT 2012 Rank 166 Aligned Residues 181 % Identity 7% Template c2b5nD_ PDB info PDB header:dna binding protein/protein binding Chain: D: PDB Molecule:damage-specific dna binding protein 1; PDBTitle: crystal structure of the ddb1 bpb domain Resolution 2.80 Å

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		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																						.																																														.	.
Query SS confidence																						.																																														.	.
Query Sequence		G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	.	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	.	.	Q	I	M	W	K	R	E	L	G	S	V	N
Query Conservation																						.																																														.	.
Alig confidence																						.																																														.	.
Template Conservation
Template Sequence		R	E	T	Y	D	T	L	V	L	S	F	V	G	Q	T	R	V	L	M	L	N	G	E	E	V	E	E	T	E	L	M	G	F	V	D	D	Q	Q	T	F	F	C	G	N	V	A	H	Q	Q	L	I	Q	I	T	S	A	S	V	R	L	V	S	Q	E	P	K	A	L	V	S	E	W	K	E	P	Q	A	K	N	I
Template Known Secondary structure				S	B								S	S								S	S	S								T	T	S		S	S	S									T	T	T							T	T							T	T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.									.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.										.
Query SS confidence																																															.	.	.	.	.	.	.	.										.
Query Sequence		D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	.	.	.	.	.	.	.	.	Y	N	G	N	L	V	V	G	D	.	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A
Query Conservation																																															.	.	.	.	.	.	.	.										.
Alig confidence																																															.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		S	V	A	S	C	N	S	S	Q	V	V	V	A	V	G	R	A	L	Y	Y	L	Q	I	H	P	Q	E	L	R	Q	I	S	H	T	E	M	E	H	E	V	A	C	L	D	I	T	P	L	G	D	S	N	G	L	S	P	L	C	A	I	G	L	W	T	D	I	S	A	R	I	L	K	L	P	S	F	E	L	L	H
Template Known Secondary structure								S	S							T	T									T	T											S	S											T	T			S			S							S	S	S		B						T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.					.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	.	.	.	.	L	L	I	Q	A	K	D	G	T	V	Y	S	I	T
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.
Template Conservation
Template Sequence		K	E	M	L	G	G	E	I	I	P	R	S	I	L	M	T	T	F	E	S	S	H	Y	L	L	C	A	L	G	D	G	A	L	F	Y	F	G
Template Known Secondary structure				B			S	S												T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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