Job Description P77774 Confidence 98.87% Date Thu Jan 5 12:32:43 GMT 2012 Rank 59 Aligned Residues 291 % Identity 10% Template c1vyhT_ PDB info PDB header:hydrolase Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib PDBTitle: paf-ah holoenzyme: lis1/alfa2 Resolution 3.4 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.
Template Sequence		G	H	R	S	P	V	T	R	V	I	F	H	P	V	F	S	V	M	V	S	A	S	E	D	A	T	I	K	V	W	D	Y	E	T	G	D	F	E	R	T	L	K	.	.	.	.	.	.	.	.	G	H	T	D	S	V	Q	D	I	S	F	D	H	S	G	K	L	L	A	S	C	S	A	D	M	T	I	K	L	W
Template Known Secondary structure				S	S									S	S	S	S							S	S	S							T	T	T									.	.	.	.	.	.	.	.			S	S									T	T	S	S							T	T	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	F	Q	G	F	E	C	I	R	T	M	H	G	H	D	H	N	V	S	S	V	S	I	M	P	N	G	D	H	I	V	S	A	S	R	D	K	T	I	K	M	W	E	V	Q	T	G	Y	C	V	K	T	F	T	G	H	R	E	W	V	R	M	V	R	P	N	Q	D	G	T	L	I	A	S	C	S	N	D	Q	T
Template Known Secondary structure			T	T	S	S										S	S									S	S	S	S							T	T	T							T	T	T											S	S									T	T	S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	V	W	V	V	A	T	K	E	C	K	A	E	L	R	E	H	R	H	V	V	E	C	I	S	W	A	P	E	S	S	Y	S	S	I	S	E	A	T	G	S	E	G	P	F	L	L	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	T											S	S		B					B			S		G	G	G	G	G	G	G			S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	.	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A
Query Conservation																																											.
Alig confidence		.	.	.	.	.																																					.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	S	R	D	K	T	I	K	M	W	D	V	S	T	G	M	C	L	M	T	L	V	G	H	D	N	W	V	R	G	V	L	F	H	S	G	G	K	F	I	L	S	C	A	D	D	K	T	L	R	V	W	D	Y	K	N	K	R	C	M	K	T	L	N	A	H	E	H	F	V	T	S	L	D	F	H
Template Known Secondary structure		.	.	.	.	.	B	S	S	S							T	T	T	T										S	S									S	S	S	S							S	S	S								S	T	T										S	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		374	.	.	.		.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		A	D	G	K	.	L	L	I	Q	A	K	D	G	T	V	Y
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		K	T	A	P	Y	V	V	T	G	S	V	D	Q	T	V	K
Template Known Secondary structure		S	S	S	S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions