Job Description P77774 Confidence 98.60% Date Thu Jan 5 12:32:43 GMT 2012 Rank 76 Aligned Residues 338 % Identity 8% Template c1pi6A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form Resolution 2.50 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	T	T	A	W	S	T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V
Query Conservation
Alig confidence																																																																				.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.
Template Sequence		S	G	E	F	L	K	Y	I	E	D	D	Q	E	P	V	Q	G	G	I	F	A	L	S	W	L	D	S	Q	K	F	A	T	V	G	A	D	A	T	I	R	V	W	D	V	T	T	S	K	C	V	Q	K	W	T	L	D	K	Q	Q	L	G	N	Q	Q	V	G	.	.	.	.	.	V	V	A	T	G	N	G	R	I
Template Known Secondary structure		T										T	T					S								S	S	S	S							T	T	T							T	T	T	T										T	T	S	G	G	G					.	.	.	.	.						T	T
Template Predicted Secondary structure																																																																				.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.																								.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	L	S	L	D	G	T	L	N	F	Y	E	L	G	H	D	E	V	L	K	T	I	S	G	H	N	K	G	I	T	A	L	T	V	N	P	L	I	S	G	S	Y	D	G	R	I	M	E	W	S	S	S	S	M	H	Q	D	H	S	N	L	I	V	S	L	D	N	S	K	A	Q	E	Y	S	S	I	S	W	D
Template Known Secondary structure						T	T	S							T	T												S	S							T	T	T	T					T	T	S					T	T	T	T								S									S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	L	K	V	N	G	I	T	K	H	E	F	G	S	Q	P	K	V	A	S	A	N	N	D	G	F	T	A	V	L	T	N	D	D	D	L	L	I	L	Q	S	F	T	G	D	I	I	K	S	V	R	L	N	S	P	G	S	A	V	S	L	S	Q	N	Y	V	A	V	G	L	E	E	G	N	T	I	Q	V	F
Template Known Secondary structure		S					T	T							S	S									S	S	S							T	T	S							T	T	T										S	S									S	S							T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.							.
Predicted Secondary structure																																																																											.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.
Query Sequence		A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	.	.	.	.	.	.	Y
Query Conservation																																																																											.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		K	L	S	D	L	E	V	S	F	D	L	K	T	P	L	R	A	K	P	S	Y	I	S	I	S	P	.	.	.	.	.	.	S	E	T	Y	I	A	A	G	D	V	M	G	K	I	L	L	Y	D	L	Q	S	R	E	V	K	T	S	R	W	A	F	R	T	S	K	I	N	A	I	S	W	K	P	A	E	E	I	E
Template Known Secondary structure			T	T									S	S			S	S	S								T	.	.	.	.	.	.	T	S	S							T	T	S							T	T	T	T							S				S	S
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.							.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	.	R	F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L	I	Q	A	K	D	G	T	V	Y	S	I	T
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		E	D	L	V	A	T	G	S	L	D	T	N	I	F	I	Y	S	V	K	R	P	M	K	I	I	K	A	L	N	A	H	K	D	G	V	N	N	L	L	W	E	T	P	S	T	L	V	S	S	G	A	D	A	C	I	K	R	W	N
Template Known Secondary structure										T	T	S							S	S		T	T						S	S	S	S	T	T										T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions