Phyre 2 alignment of P77774 with c1nnoA

Job Description P77774
Confidence 99.42% Date Thu Jan 5 12:32:43 GMT 2012

Rank 32 Aligned Residues 314

% Identity 8% Template c1nnoA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa

Resolution 2.65 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	P	T	T	A	W	S	T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V
Query Conservation
Alig confidence														.	.	.	.																																																					.	.	.
Template Conservation														.	.	.	.																																																					.	.	.
Template Sequence	S	K	K	I	V	K	V	I	D	T	G	Y	A	.	.	.	.	V	H	I	S	R	M	S	A	S	G	R	Y	L	L	V	I	G	R	D	A	R	I	D	M	I	D	L	W	A	K	E	P	T	K	V	A	E	I	K	I	G	I	E	A	R	S	V	E	S	S	K	F	.	.	.	K	G	Y	E	D	R	Y	T
Template Known Secondary structure	T										S	S	S	.	.	.	.								T	T	S								T	T	S							S	S	S	S	S										S	S										S	.	.	.	T	T		T	T	S
Template Predicted Secondary structure														.	.	.	.																																																					.	.	.
Template SS confidence
	168	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240

	123	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.														.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure					.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Y	I	G	S	.	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D
Query Conservation					.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	A	G	A	Y	W	P	P	Q	F	A	I	M	D	G	E	T	L	E	P	K	Q	I	V	S	T	R	G	M	T	V	D	T	Q	T	Y	H	P	E	P	R	V	A	A	I	I	A	S	H	E	H	P	E	F	I	V	N	V	K	E	T	G	K	V	L	L	V	N	Y	K	D	I	D	N	L	T	V	T	S	I
Template Known Secondary structure							T	T							T	T	T														S	S	S					S											S	S	S	S							T	T	T	T								T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.
Query Sequence	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	.	.	.	.	.	N	G	V	V	F	A	L	A	Y
Query Conservation																																																																			.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.
Template Conservation
Template Sequence	G	A	A	P	F	L	H	D	G	G	W	D	S	S	H	R	Y	F	M	T	A	A	N	N	S	N	K	V	A	V	I	D	S	K	D	R	R	L	S	A	L	V	D	V	G	K	T	P	H	P	G	R	G	A	N	F	V	H	P	K	Y	G	P	V	W	S	T	S	H	L	G	D	G	S	I	S	L	I	G	T
Template Known Secondary structure				S	S								T	T	S								G	G	G	T							T	T	T	T									S	S	S	B			T	T							T	T	T								B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

	264										.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.											320	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence	N	.	.	.	.	.	.	.	.	.	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	.	.	.	.	.	.	.	.	.	.	S	D	L	L	H
Query Conservation		.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	P	K	N	H	P	Q	Y	A	W	K	K	V	A	E	L	Q	G	Q	G	G	G	S	L	F	I	K	T	H	P	K	S	S	H	L	Y	V	D	T	T	F	N	P	D	A	R	I	S	Q	S	V	A	V	F	D	L	K	N	L	D	A	K	Y	Q	V	L	P	I	A	E	W	A	D	L	G	E	G	A	K	R
Template Known Secondary structure		T	T	T		T	T	T	B	T	S								S		S									T	T									T	T		S	S					T							T	T		T	T	S															S	S
Template Predicted Secondary structure
Template SS confidence
	401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480

	325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340						.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	.	.	.	.	.	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence	V	V	Q	P	E	Y	N	K	R	G	D	E	V	W	F	S	V	W	N	G	K	N	D	S	S	A	L	V	V	V	D	D	K	T	L	K	L	K	A	V	V	K	D	P
Template Known Secondary structure								S	S	S	S										T	T	S									T	T	T										T
Template Predicted Secondary structure
Template SS confidence
	481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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