Job Description P77774 Confidence 99.56% Date Thu Jan 5 12:32:43 GMT 2012 Rank 20 Aligned Residues 321 % Identity 12% Template c1nexD_ PDB info PDB header:ligase, cell cycle Chain: D: PDB Molecule:cdc4 protein; PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex Resolution 2.70 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.
Template Sequence		X	T	S	V	I	T	C	L	Q	F	E	D	N	Y	V	I	T	G	A	D	D	K	X	I	R	V	Y	D	S	I	N	K	K	F	L	L	Q	L	S	.	.	.	.	.	.	.	.	.	G	H	D	G	G	V	W	A	L	K	Y	A	H	G	G	I	L	V	S	G	S	T	D	R	T	V	R	V	W	D	I	K
Template Known Secondary structure		S	S	S									T	T							T	T	T							T	T	T	T								.	.	.	.	.	.	.	.	.			S	S									T	T	T							T	T	S							T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.										420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	.	.	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R
Query Conservation																						.	.
Alig confidence																						.	.
Template Conservation
Template Sequence		K	G	C	C	T	H	V	F	E	G	H	N	S	T	V	R	C	L	D	I	V	E	Y	K	N	I	K	Y	I	V	T	G	S	R	D	N	T	L	H	V	W	K	L	P	K	D	Y	P	L	V	F	H	T	P	E	E	N	P	Y	F	V	G	V	L	R	G	H	X	A	S	V	R	T	V	S	G	H	G	N	I
Template Known Secondary structure		T	T										S	S											T	T									T	T	S																S		T	T	T		T	T									S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	.	.	D	F	I	V	D	G
Query Conservation																																																																										.	.
Alig confidence																																																																										.	.
Template Conservation
Template Sequence		V	V	S	G	S	Y	D	N	T	L	I	V	W	D	V	A	Q	X	K	C	L	Y	I	L	S	G	H	T	D	R	I	Y	S	T	I	Y	D	H	E	R	K	R	C	I	S	A	S	X	D	T	T	I	R	I	W	D	L	E	N	G	E	L	X	Y	T	L	Q	G	H	T	A	L	V	G	L	L	R	L	S	D
Template Known Secondary structure							T	T	S							T	T	T	T										S	S									T	T	T	T							T	T	S							T	T	T											S	S									S
Template Predicted Secondary structure
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	.	Q	K	V	D	S	S	G	F	Q	T	E	P	V
Query Conservation																																																																				.
Alig confidence																																																		.																		.
Template Conservation																																																		.
Template Sequence		K	F	L	V	S	A	A	A	D	G	S	I	R	G	W	D	A	N	D	Y	S	R	K	F	S	Y	H	H	T	N	L	S	A	I	T	T	F	Y	V	S	D	N	I	L	V	S	G	S	.	E	N	Q	F	N	I	Y	N	L	R	S	G	K	L	V	H	A	N	I	L	K	D	A	D	Q	I	W	S	V	N	F
Template Known Secondary structure		S							T	T	S							T	T	T										T	T											S	S							.	T	T							T	T	T						S		T	T	T	T		S
Template Predicted Secondary structure																																																		.
Template SS confidence
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690		.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	D	G	K	L	L	I	Q	A	K	D	G	T	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	K	T	L	V	A	A	V	E	K	D	G	Q	S	F
Template Known Secondary structure			T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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